SRR2935365.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935365.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617825
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9377	1.5177436976490106	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	2419	0.3915348197305062	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	1884	0.3049407194593938	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC	1847	0.2989519685995225	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTT	1156	0.18710799983814186	No Hit
CGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTG	1010	0.16347671266135233	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	936	0.15149921094160967	Illumina Single End Adapter 2 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	804	0.13013393760369038	No Hit
CGTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	787	0.1273823493707765	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	684	0.11071096184194554	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	658	0.10650265042690082	No Hit
GAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	637	0.10310362966859549	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAACG	35	1.2107012E-7	45.000004	1
TCACGAC	20	7.03075E-4	45.0	25
CTTCGTC	20	7.03075E-4	45.0	41
GTATGCG	20	7.03075E-4	45.0	1
CGCCCCG	20	7.03075E-4	45.0	25
TACGTGG	30	2.1638662E-6	44.999996	2
CGTTTTT	4530	0.0	43.013245	1
TACGGCT	225	0.0	41.0	7
CTACGAA	45	1.925764E-8	40.0	11
TGTAACG	45	1.925764E-8	40.0	1
ACAACGA	145	0.0	38.793106	13
TTGTACG	35	6.2435975E-6	38.57143	1
TTAACGG	35	6.2435975E-6	38.57143	2
ACGACCA	35	6.2435975E-6	38.57143	28
CACAACG	150	0.0	37.500004	12
CGAAACT	30	1.13931106E-4	37.499996	33
TTAAGCG	30	1.13931106E-4	37.499996	1
TACGAAG	30	1.13931106E-4	37.499996	1
ACGGAAT	30	1.13931106E-4	37.499996	5
TAGTACG	30	1.13931106E-4	37.499996	1