SRR2935362.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935362.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591750
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19121	3.231263202365864	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC	17327	2.928094634558513	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG	7511	1.2692860160540769	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC	7057	1.1925644275454161	No Hit
GAACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT	5314	0.8980143641740599	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTT	3724	0.6293198141106886	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	2879	0.48652302492606675	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTT	2414	0.40794254330376	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT	1742	0.2943810730882974	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTC	1678	0.2835656949725391	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	1603	0.2708914237431348	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC	1592	0.26903253062948884	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT	1424	0.24064216307562317	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGTTCGT	1270	0.21461765948457964	No Hit
CGTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT	1028	0.1737220109843684	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTA	867	0.14651457541191382	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCC	755	0.12758766370933672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATC	20	7.030509E-4	45.000004	45
CGGTCTA	40	6.8048394E-9	45.000004	31
CGCTTAT	20	7.030509E-4	45.000004	31
TTAAGCG	30	2.1637097E-6	44.999996	1
CGTTTTT	9225	0.0	44.26829	1
CCGATGA	585	0.0	40.769234	18
TAGCCGT	50	1.0804797E-9	40.5	44
GTAGCCG	50	1.0804797E-9	40.5	43
CGATGAA	600	0.0	40.125004	19
TCACGAC	45	1.9255822E-8	40.0	25
CGACGGT	45	1.9255822E-8	40.0	28
CGTTAGG	45	1.9255822E-8	40.0	2
GTTTTTT	10285	0.0	39.90277	2
GCGAACC	40	3.4544246E-7	39.375004	33
GTTACGG	40	3.4544246E-7	39.375004	2
AAGCACG	40	3.4544246E-7	39.375004	1
CGTTTTC	180	0.0	38.75	1
CGTTTCT	320	0.0	38.67188	1
TACGGCT	955	0.0	38.63874	7
GCCGATG	35	6.2431536E-6	38.571426	9