SRR2935359.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935359.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615845
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4403	0.7149526260666239	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC	3090	0.5017496285591342	No Hit
GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	2414	0.391981748654288	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGC	2335	0.3791538455293134	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG	2220	0.360480315663844	No Hit
CCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	1886	0.3062458897936981	TruSeq Adapter, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT	1690	0.27441969976211544	TruSeq Adapter, Index 19 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTG	1677	0.27230877899471456	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTT	1506	0.24454205197736445	No Hit
CGTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	1357	0.22034765241253887	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC	1298	0.21076731969895024	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCT	1129	0.18332534972273867	No Hit
TCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	834	0.13542368615479544	TruSeq Adapter, Index 16 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	810	0.13152660166113225	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCC	696	0.11301545031623217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	30	2.1638534E-6	45.000004	2
ACGCGAG	25	3.888689E-5	45.0	1
ACGCCTA	20	7.0307334E-4	45.0	19
CTCGTAG	20	7.0307334E-4	45.0	1
CGCGGTC	20	7.0307334E-4	45.0	22
CACGGGC	40	6.8066583E-9	45.0	4
CGTGCTT	20	7.0307334E-4	45.0	33
CTATACG	25	3.888689E-5	45.0	1
CTCGAAT	20	7.0307334E-4	45.0	43
TTACCGG	25	3.888689E-5	45.0	2
TATCGTG	20	7.0307334E-4	45.0	1
AGGTGCG	20	7.0307334E-4	45.0	1
CGTTTTT	2900	0.0	43.913795	1
CGACGGT	70	0.0	41.785717	28
TCACGAC	60	3.6379788E-12	41.250004	25
CGGTCTA	60	3.6379788E-12	41.250004	31
CGCGACC	115	0.0	41.086956	10
GCGCGAC	120	0.0	39.375004	9
GTTTACG	35	6.2435647E-6	38.57143	1
CGACAGG	70	0.0	38.57143	2