SRR2935357.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935357.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436355
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8706	1.9951644876304842	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTC	1564	0.3584237604702593	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTT	1084	0.24842158334383702	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGC	861	0.19731640522051996	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCG	809	0.1853995026984909	No Hit
CGCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTG	778	0.1782951954257428	Illumina Single End Adapter 2 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTC	750	0.17187840176003483	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCT	692	0.15858647202392548	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCT	624	0.14300283026434898	No Hit
GCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGC	526	0.1205440524343711	Illumina Single End Adapter 2 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCT	503	0.11527311478039669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	45	3.8380676E-10	45.000004	9
CTCGATC	25	3.8868136E-5	45.000004	16
GGCGCGA	45	3.8380676E-10	45.000004	8
TAGTGCG	25	3.8868136E-5	45.000004	1
GTCTACT	20	7.0284726E-4	45.0	29
AAGCGCG	20	7.0284726E-4	45.0	1
CGTAAGG	70	0.0	45.0	2
CGTTTTT	4900	0.0	44.21939	1
CGCAAGG	60	3.6379788E-12	41.249996	2
CGTGAAT	50	1.0786607E-9	40.500004	27
TGGGCCG	40	3.4516415E-7	39.375	6
GCGAAAG	35	6.2393847E-6	38.571426	1
GGACGTT	35	6.2393847E-6	38.571426	8
GCGTAAG	35	6.2393847E-6	38.571426	1
GTTTTTT	5660	0.0	38.440815	2
CCCCCGT	65	9.094947E-12	38.076927	23
ACGCCGG	90	0.0	37.500004	27
CACGCCG	90	0.0	37.500004	26
GCGCGAG	30	1.1387619E-4	37.499996	1
CCCGTGA	60	1.546141E-10	37.499996	25