##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935351.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1957004 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26443941862153 33.0 31.0 34.0 30.0 34.0 2 32.41020355604792 34.0 31.0 34.0 30.0 34.0 3 32.46594539408198 34.0 31.0 34.0 30.0 34.0 4 35.955026152220434 37.0 35.0 37.0 35.0 37.0 5 31.626549051509347 37.0 35.0 37.0 0.0 37.0 6 33.40575798516508 37.0 35.0 37.0 17.0 37.0 7 35.251094530210466 37.0 35.0 37.0 32.0 37.0 8 35.81502899329792 37.0 35.0 37.0 35.0 37.0 9 37.8714003650478 39.0 38.0 39.0 35.0 39.0 10 37.46035674939857 39.0 37.0 39.0 35.0 39.0 11 37.35747704143681 39.0 37.0 39.0 34.0 39.0 12 37.27186147805523 39.0 37.0 39.0 34.0 39.0 13 37.271073538940136 39.0 37.0 39.0 34.0 39.0 14 38.47794332561405 40.0 38.0 41.0 34.0 41.0 15 38.534956494723566 40.0 38.0 41.0 34.0 41.0 16 38.570349881758034 40.0 38.0 41.0 34.0 41.0 17 38.57708211122716 40.0 38.0 41.0 35.0 41.0 18 38.55809850158712 40.0 38.0 41.0 35.0 41.0 19 38.568059646275636 40.0 38.0 41.0 34.0 41.0 20 38.5062508814494 40.0 38.0 41.0 34.0 41.0 21 38.45481460436463 40.0 38.0 41.0 34.0 41.0 22 38.414582698860094 40.0 38.0 41.0 34.0 41.0 23 38.34478008220729 40.0 38.0 41.0 34.0 41.0 24 38.32607700341951 40.0 37.0 41.0 34.0 41.0 25 38.235102738676055 40.0 37.0 41.0 34.0 41.0 26 38.18405072243082 40.0 37.0 41.0 34.0 41.0 27 38.14990720509513 40.0 37.0 41.0 34.0 41.0 28 38.14081524616199 40.0 37.0 41.0 34.0 41.0 29 38.088336048367815 40.0 37.0 41.0 34.0 41.0 30 38.0232447148805 40.0 37.0 41.0 34.0 41.0 31 37.83999675013439 40.0 37.0 41.0 33.0 41.0 32 37.88098440268901 40.0 37.0 41.0 33.0 41.0 33 37.876322174098775 40.0 37.0 41.0 33.0 41.0 34 37.88489395014011 40.0 37.0 41.0 34.0 41.0 35 37.84288892613403 40.0 37.0 41.0 33.0 41.0 36 37.81137238350049 40.0 37.0 41.0 33.0 41.0 37 37.79576791871657 40.0 37.0 41.0 33.0 41.0 38 37.803806226251965 40.0 37.0 41.0 33.0 41.0 39 37.7767286116942 40.0 37.0 41.0 33.0 41.0 40 37.72868118818357 40.0 37.0 41.0 33.0 41.0 41 37.7146045690249 40.0 37.0 41.0 33.0 41.0 42 37.714610700846805 40.0 37.0 41.0 33.0 41.0 43 37.67813044837926 40.0 36.0 41.0 33.0 41.0 44 37.62692871348244 40.0 36.0 41.0 33.0 41.0 45 37.63069058622261 40.0 36.0 41.0 33.0 41.0 46 37.513801198158 39.0 36.0 41.0 33.0 41.0 47 37.48990037833341 39.0 36.0 41.0 33.0 41.0 48 37.47839248156877 39.0 36.0 41.0 33.0 41.0 49 37.480125232242756 39.0 36.0 41.0 33.0 41.0 50 37.4325336074939 39.0 36.0 41.0 33.0 41.0 51 36.78260596299241 39.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 6.0 11 7.0 12 7.0 13 18.0 14 13.0 15 22.0 16 40.0 17 67.0 18 117.0 19 243.0 20 496.0 21 874.0 22 1449.0 23 2397.0 24 3776.0 25 5707.0 26 7882.0 27 9840.0 28 12616.0 29 16687.0 30 22518.0 31 30482.0 32 42712.0 33 62264.0 34 97762.0 35 142575.0 36 164579.0 37 263658.0 38 444582.0 39 623087.0 40 521.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.422693055302904 4.520532405656811 60.165027766933534 12.891746772106751 2 19.17170327705002 4.058652920484578 54.5138895985905 22.255754203874904 3 19.245591731033766 3.9533388792255915 53.81843879726357 22.982630592477072 4 18.398940421174405 4.0815961541213 52.72789427103879 24.791569153665503 5 15.110239938191237 16.94084427011902 47.156520886007385 20.79239490568236 6 18.986777748027087 6.2815916574519015 56.555786293742884 18.17584430077813 7 82.40095574664129 1.8417438083928288 10.480765496646915 5.276534948318961 8 85.01055695338384 1.7111360017659647 7.502079709596915 5.7762273352532745 9 80.01061827160292 4.172091625770821 10.057158799879815 5.7601313027464425 10 36.540344322239505 22.386362010501767 22.727291308551234 18.346002358707494 11 25.656104944088003 27.491103748382734 24.971589225162543 21.88120208236672 12 20.442829958446687 23.55048839961492 33.239584589505185 22.767097052433208 13 21.022849212367476 25.693815648818298 35.070393315496545 18.21294182331768 14 20.77415273550795 27.17403745725609 31.846332455120173 20.205477352115786 15 18.41948202456408 26.996981099680937 34.0518976966833 20.531639179071686 16 18.327657991501294 25.680734428749254 32.49753194168228 23.49407563806717 17 18.727606075409145 27.52477767035734 29.076997287690777 24.670618966542733 18 20.478445624025294 25.299335106111176 32.72216101755541 21.500058252308122 19 21.16316573701433 28.650835665128945 29.553593145440683 20.632405452416037 20 22.16622960402738 27.733668403334892 29.431518790968237 20.66858320166949 21 22.779922779922778 28.32911940905588 29.155586805136828 19.735371005884506 22 21.149164743659185 25.955031262072026 27.991920302666728 24.90388369160206 23 19.149168831540457 27.910469268330573 27.15533540043863 25.785026499690346 24 20.809308514443504 26.84710915256177 28.85747806340713 23.486104269587592 25 18.85790729094064 28.246442010338253 27.405871423870366 25.489779274850743 26 18.216518719430315 28.55620121369195 29.853388138194916 23.373891928682824 27 19.441196849878693 27.065350913948055 29.81164065070894 23.681811585464313 28 17.46245792037216 25.54527226311239 32.875098875628254 24.117170940887192 29 18.00752578942097 24.576495500264688 33.01715274981554 24.398825960498804 30 19.319786776112874 27.160956237187044 30.258037285565077 23.261219701135 31 17.879932795231895 28.345879722269345 28.467800781194114 25.306386701304646 32 17.374415177485584 27.77643786113876 28.96723767554895 25.881909285826705 33 18.105277250327543 27.284563547136337 27.08941831493446 27.520740887601658 34 16.484790015758783 25.859988022507874 29.77035304986602 27.884868911867322 35 16.114172479974492 24.600562901251095 30.192988874831116 29.09227574394329 36 18.02403061005496 25.95298732143624 28.65287960576473 27.37010246274407 37 15.868388618520965 26.64700736431811 31.318331490380192 26.16627252678073 38 16.65908705347562 27.87005034225786 30.00750126213334 25.46336134213318 39 18.194086470952538 26.895346151566375 29.76841130626202 25.14215607121907 40 18.510897269499704 26.30515829298254 28.003110877647668 27.180833559870088 41 16.777022428160596 24.630302237501812 27.095090250198773 31.49758508413882 42 18.003948893308344 24.244406245465004 27.723550897187742 30.02809396403891 43 18.658009896760557 23.845071343747893 30.554868564397413 26.942050195094136 44 17.812022867607833 24.980480366928223 29.825488348516405 27.38200841694754 45 19.054023394944515 24.481043472573383 29.017518615189342 27.447414517292763 46 19.819376966015398 24.69054738774167 29.595902716601497 25.894172929641428 47 16.3167269969811 24.643741147182123 31.682255120582276 27.357276735254498 48 16.50267449632193 23.579103568515954 31.152159116690616 28.7660628184715 49 18.295721419067103 22.406137136153017 32.324563465378716 26.973577979401163 50 18.321934957721087 21.575070873641547 30.53448025655543 29.56851391208194 51 16.81744135423331 22.627700301072455 27.59401615939467 32.96084218529957 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 186.0 1 464.5 2 743.0 3 2156.5 4 3570.0 5 2541.0 6 1512.0 7 1621.0 8 1730.0 9 2267.5 10 2805.0 11 3117.5 12 3430.0 13 3685.0 14 3940.0 15 4139.5 16 4339.0 17 4797.5 18 5256.0 19 5056.5 20 4857.0 21 4982.5 22 5108.0 23 5986.5 24 6865.0 25 7736.0 26 11577.5 27 14548.0 28 16580.5 29 18613.0 30 23980.5 31 29348.0 32 35418.5 33 41489.0 34 47893.5 35 54298.0 36 62469.0 37 70640.0 38 80097.5 39 89555.0 40 97255.5 41 104956.0 42 121326.0 43 137696.0 44 157834.5 45 177973.0 46 208318.0 47 238663.0 48 263922.0 49 289181.0 50 261636.5 51 234092.0 52 188691.5 53 143291.0 54 116723.5 55 90156.0 56 73753.0 57 57350.0 58 49188.0 59 41026.0 60 34218.5 61 27411.0 62 22470.0 63 17529.0 64 14203.5 65 10878.0 66 8371.0 67 5864.0 68 4632.5 69 3401.0 70 2947.0 71 2493.0 72 2163.5 73 1834.0 74 1288.5 75 605.5 76 468.0 77 424.5 78 381.0 79 226.5 80 72.0 81 64.5 82 57.0 83 33.5 84 10.0 85 23.0 86 36.0 87 19.0 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1957004.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.115781200517514 #Duplication Level Percentage of deduplicated Percentage of total 1 66.1615709580452 19.26345823896958 2 14.113609238672714 8.218575170855946 3 6.176618269757534 5.3951119830413825 4 3.3411066475588385 3.8911572047167087 5 1.9412597993290588 2.826064778531271 6 1.2939422055356353 2.2604482885494375 7 0.8676634194773134 1.7683888794036016 8 0.6827850543298787 1.590385619908177 9 0.5030151914248089 1.3181112228655052 >10 4.052099146233181 25.561471353611275 >50 0.6919794844716521 13.695918079726432 >100 0.16197737746556864 8.453260383847933 >500 0.00749891375667018 1.479613449805964 >1k 0.004124402566168599 2.1409008273984407 >5k 3.74945687833509E-4 0.9617187210732018 >10k+ 3.74945687833509E-4 1.1754157976951205 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC 10952 0.5596309460788021 TruSeq Adapter, Index 19 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGCT 10582 0.5407244951977616 TruSeq Adapter, Index 13 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC 9298 0.4751140007889611 TruSeq Adapter, Index 19 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC 8321 0.425190750759835 TruSeq Adapter, Index 19 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG 4685 0.2393965469666899 TruSeq Adapter, Index 13 (95% over 21bp) TTCCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCT 3060 0.15636145863779533 No Hit TGCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG 2302 0.11762878358960942 TruSeq Adapter, Index 13 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG 2195 0.11216124238887606 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCC 2148 0.10975961214182495 No Hit TGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGCTT 1959 0.10010199263772582 TruSeq Adapter, Index 19 (95% over 24bp) TTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG 1958 0.10005089412183112 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.1098515894704354E-5 0.0 0.0 0.5564628380933304 0.0 2 5.1098515894704354E-5 0.0 0.0 2.107353894013502 0.0 3 5.1098515894704354E-5 0.0 0.0 3.016396491780293 0.0 4 5.1098515894704354E-5 0.0 0.0 4.0718874361013055 0.0 5 5.1098515894704354E-5 0.0 0.0 5.823186871360508 0.0 6 5.1098515894704354E-5 0.0 0.0 7.201671534651948 0.0 7 5.1098515894704354E-5 0.0 0.0 8.341934916842275 0.0 8 5.1098515894704354E-5 0.0 0.0 10.18623365102984 0.0 9 5.1098515894704354E-5 0.0 0.0 11.034417916366037 0.0 10 5.1098515894704354E-5 0.0 0.0 12.669263833901208 0.0 11 5.1098515894704354E-5 0.0 0.0 15.584434165694091 0.0 12 5.1098515894704354E-5 0.0 0.0 17.827505717923927 0.0 13 5.1098515894704354E-5 0.0 0.0 18.584990117547026 0.0 14 5.1098515894704354E-5 0.0 0.0 18.825919619990557 0.0 15 5.1098515894704354E-5 0.0 0.0 19.166746721008234 0.0 16 5.1098515894704354E-5 0.0 0.0 20.119018663221944 0.0 17 5.1098515894704354E-5 0.0 0.0 21.632199014411825 0.0 18 5.1098515894704354E-5 0.0 0.0 23.230305099018704 0.0 19 1.0219703178940871E-4 0.0 0.0 24.31221397605728 0.0 20 1.0219703178940871E-4 0.0 0.0 25.330811791902317 0.0 21 1.0219703178940871E-4 0.0 0.0 26.8439410445763 0.0 22 1.0219703178940871E-4 0.0 0.0 28.41803082671267 0.0 23 1.0219703178940871E-4 0.0 0.0 30.05798659583731 0.0 24 1.0219703178940871E-4 0.0 0.0 31.231974998518144 0.0 25 1.5329554768411306E-4 0.0 0.0 32.247047016766444 0.0 26 1.5329554768411306E-4 0.0 0.0 33.122620086622206 0.0 27 1.5329554768411306E-4 0.0 0.0 33.97555651393661 0.0 28 2.0439406357881742E-4 0.0 0.0 34.94545744413399 0.0 29 2.0439406357881742E-4 0.0 0.0 35.89522555906886 0.0 30 3.065910953682261E-4 0.0 0.0 36.85061451075215 0.0 31 3.065910953682261E-4 0.0 0.0 37.838144428933205 0.0 32 3.065910953682261E-4 0.0 0.0 38.73982884041116 0.0 33 3.065910953682261E-4 0.0 0.0 39.63814074984006 0.0 34 3.576896112629305E-4 0.0 0.0 40.48361679383384 0.0 35 3.576896112629305E-4 0.0 0.0 41.35075860856697 0.0 36 3.576896112629305E-4 0.0 0.0 42.220148757999475 0.0 37 3.576896112629305E-4 0.0 0.0 43.07742855916493 0.0 38 3.576896112629305E-4 0.0 0.0 43.95806038209426 0.0 39 3.576896112629305E-4 0.0 0.0 44.788155772803734 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCAC 25 3.8918137E-5 45.0 11 GCGGTTT 20 7.0345047E-4 45.0 26 TGCGGTC 50 2.1827873E-11 45.0 4 CACGACG 25 3.8918137E-5 45.0 26 TCGTGAC 20 7.0345047E-4 45.0 18 GACGCGA 20 7.0345047E-4 45.0 17 GCTACGA 35 1.2125201E-7 45.0 10 CGCGTTT 20 7.0345047E-4 45.0 39 CGCAATT 20 7.0345047E-4 45.0 34 ATCGGCG 20 7.0345047E-4 45.0 12 CGACTAT 20 7.0345047E-4 45.0 20 CCGTTCG 25 3.8918137E-5 45.0 1 GCGTAGT 20 7.0345047E-4 45.0 44 CTAACGG 30 2.1662872E-6 44.999996 2 CCGACGG 30 2.1662872E-6 44.999996 2 TATCCGG 30 2.1662872E-6 44.999996 2 TACGGGA 635 0.0 43.228348 4 ACGGGTA 225 0.0 43.0 5 TAACGGG 95 0.0 42.63158 3 CGTATGG 265 0.0 42.45283 2 >>END_MODULE