SRR2935349.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935349.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1643321
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	5741	0.3493535347019846	No Hit
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	5620	0.3419903962768078	No Hit
TCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	5468	0.33274083395757736	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	5289	0.32184825727901	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC	3853	0.2344642343157545	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG	3418	0.20799344741532544	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	2906	0.176837026971602	No Hit
TCCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTG	2095	0.12748574380781358	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1694	0.10308393795247552	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGG	20	7.034172E-4	45.000004	30
GTACCGT	20	7.034172E-4	45.000004	32
GTCGCAA	20	7.034172E-4	45.000004	37
CGACGTC	20	7.034172E-4	45.000004	33
GGCGTAC	40	6.8175723E-9	45.000004	8
GCGTTAA	20	7.034172E-4	45.000004	20
CCTCGGA	20	7.034172E-4	45.000004	18
AACGCGA	20	7.034172E-4	45.000004	34
TCGTACC	20	7.034172E-4	45.000004	44
CGTCGTT	20	7.034172E-4	45.000004	32
TTACGAC	20	7.034172E-4	45.000004	44
CGCAACA	20	7.034172E-4	45.000004	24
CGATCGA	65	0.0	45.000004	41
TTATCCG	75	0.0	45.0	1
CAATGCG	25	3.89154E-5	45.0	32
CGCAATC	50	2.1827873E-11	45.0	18
ACGAGTT	25	3.89154E-5	45.0	15
GCGTACG	25	3.89154E-5	45.0	1
CGTTATT	120	0.0	44.999996	1
CTACGCG	30	2.1660744E-6	44.999996	1