SRR2935347.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935347.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2266288
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	6734	0.29713787479790743	No Hit
CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT	6484	0.28610662016478045	No Hit
CCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	6294	0.277722866643604	No Hit
GCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	5947	0.2624114852128238	No Hit
TCCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTG	2796	0.12337355181689176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAAC	30	2.16644E-6	45.000004	11
TCTCGAT	30	2.16644E-6	45.000004	19
GCGATCG	30	2.16644E-6	45.000004	9
CCTTACG	40	6.8193913E-9	45.0	1
TCGTTAT	25	3.892011E-5	45.0	44
ATGGGCG	635	0.0	42.874016	5
TACGGGA	800	0.0	41.90625	4
CTTACGG	380	0.0	41.447372	2
TATCGCG	60	3.6379788E-12	41.250004	1
TTTACGG	1020	0.0	41.02941	2
CGAACGA	50	1.0822987E-9	40.5	22
TTACGGG	1665	0.0	40.27027	3
TTATGGG	5375	0.0	40.186047	3
CGTTTTT	1295	0.0	39.961388	1
TCACGGG	780	0.0	39.807693	3
TTTTACG	605	0.0	39.42149	1
AACGCAC	40	3.460209E-7	39.375	25
CCACGTC	40	3.460209E-7	39.375	33
TATTGCG	115	0.0	39.130432	1
ACGGGAT	450	0.0	39.0	5