SRR2935346.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935346.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	855824
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	3909	0.4567527902933313	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT	3482	0.4068593542597544	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	3402	0.39751163790685934	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	3353	0.3917861616407112	TruSeq Adapter, Index 14 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTG	1470	0.1717642879844454	TruSeq Adapter, Index 15 (95% over 21bp)
TTCCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	894	0.1044607302436015	No Hit
GCCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTG	879	0.10270803342743368	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	35	1.211447E-7	45.000004	36
AAACGTA	35	1.211447E-7	45.000004	35
TTTTACG	175	0.0	45.000004	1
TGATCGA	20	7.032277E-4	45.0	32
TCACGCG	20	7.032277E-4	45.0	23
TATCACT	20	7.032277E-4	45.0	29
GGTACGC	25	3.8899674E-5	45.0	8
ACACGAT	20	7.032277E-4	45.0	39
GCGACGT	20	7.032277E-4	45.0	15
CTCCGTA	20	7.032277E-4	45.0	21
TAGACTC	20	7.032277E-4	45.0	19
TCCGATT	20	7.032277E-4	45.0	25
CTTCACG	25	3.8899674E-5	45.0	1
CGTTGAC	20	7.032277E-4	45.0	21
TAGCGAC	20	7.032277E-4	45.0	12
ATAGCGA	20	7.032277E-4	45.0	11
CACGCGA	20	7.032277E-4	45.0	13
CACGATT	25	3.8899674E-5	45.0	13
ACGGGTA	25	3.8899674E-5	45.0	5
TGCATCG	20	7.032277E-4	45.0	18