Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935344.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 890500 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 3980 | 0.4469399213924761 | No Hit |
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT | 3771 | 0.42346996069623805 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 3539 | 0.3974171813587872 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 2610 | 0.29309376754632227 | No Hit |
TCCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTG | 1538 | 0.17271195957327345 | No Hit |
GCCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTG | 909 | 0.10207748455923638 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACGAT | 20 | 7.032431E-4 | 45.0 | 18 |
AGCGTCC | 20 | 7.032431E-4 | 45.0 | 43 |
CTATGCG | 20 | 7.032431E-4 | 45.0 | 1 |
CGGCGGA | 25 | 3.8900962E-5 | 45.0 | 10 |
ATCTCGG | 20 | 7.032431E-4 | 45.0 | 12 |
AAATCGA | 20 | 7.032431E-4 | 45.0 | 23 |
GCGACAT | 25 | 3.8900962E-5 | 45.0 | 37 |
GCGACAG | 40 | 6.8121153E-9 | 45.0 | 36 |
CGAGTAC | 25 | 3.8900962E-5 | 45.0 | 13 |
CGAAACT | 25 | 3.8900962E-5 | 45.0 | 27 |
TCCGATC | 20 | 7.032431E-4 | 45.0 | 16 |
CTATCGA | 35 | 1.2115197E-7 | 45.0 | 32 |
GACACGT | 20 | 7.032431E-4 | 45.0 | 21 |
TTTCGTC | 25 | 3.8900962E-5 | 45.0 | 44 |
CCGGCAT | 20 | 7.032431E-4 | 45.0 | 34 |
GACCGTA | 20 | 7.032431E-4 | 45.0 | 9 |
TAGCGCG | 20 | 7.032431E-4 | 45.0 | 2 |
GCCGGTC | 25 | 3.8900962E-5 | 45.0 | 28 |
CGCGCAC | 20 | 7.032431E-4 | 45.0 | 17 |
CCTACCG | 25 | 3.8900962E-5 | 45.0 | 20 |