SRR2935344.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935344.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	890500
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	3980	0.4469399213924761	No Hit
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT	3771	0.42346996069623805	No Hit
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	3539	0.3974171813587872	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	2610	0.29309376754632227	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTG	1538	0.17271195957327345	No Hit
GCCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTG	909	0.10207748455923638	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAT	20	7.032431E-4	45.0	18
AGCGTCC	20	7.032431E-4	45.0	43
CTATGCG	20	7.032431E-4	45.0	1
CGGCGGA	25	3.8900962E-5	45.0	10
ATCTCGG	20	7.032431E-4	45.0	12
AAATCGA	20	7.032431E-4	45.0	23
GCGACAT	25	3.8900962E-5	45.0	37
GCGACAG	40	6.8121153E-9	45.0	36
CGAGTAC	25	3.8900962E-5	45.0	13
CGAAACT	25	3.8900962E-5	45.0	27
TCCGATC	20	7.032431E-4	45.0	16
CTATCGA	35	1.2115197E-7	45.0	32
GACACGT	20	7.032431E-4	45.0	21
TTTCGTC	25	3.8900962E-5	45.0	44
CCGGCAT	20	7.032431E-4	45.0	34
GACCGTA	20	7.032431E-4	45.0	9
TAGCGCG	20	7.032431E-4	45.0	2
GCCGGTC	25	3.8900962E-5	45.0	28
CGCGCAC	20	7.032431E-4	45.0	17
CCTACCG	25	3.8900962E-5	45.0	20