FastQCFastQC Report
Sat 14 Jan 2017
SRR2935344.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935344.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences890500
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC39800.4469399213924761No Hit
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT37710.42346996069623805No Hit
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC35390.3974171813587872No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC26100.29309376754632227No Hit
TCCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTG15380.17271195957327345No Hit
GCCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTG9090.10207748455923638No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGAT207.032431E-445.018
AGCGTCC207.032431E-445.043
CTATGCG207.032431E-445.01
CGGCGGA253.8900962E-545.010
ATCTCGG207.032431E-445.012
AAATCGA207.032431E-445.023
GCGACAT253.8900962E-545.037
GCGACAG406.8121153E-945.036
CGAGTAC253.8900962E-545.013
CGAAACT253.8900962E-545.027
TCCGATC207.032431E-445.016
CTATCGA351.2115197E-745.032
GACACGT207.032431E-445.021
TTTCGTC253.8900962E-545.044
CCGGCAT207.032431E-445.034
GACCGTA207.032431E-445.09
TAGCGCG207.032431E-445.02
GCCGGTC253.8900962E-545.028
CGCGCAC207.032431E-445.017
CCTACCG253.8900962E-545.020