SRR2935343.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935343.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2064997
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	14806	0.7169986203369787	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	13877	0.6720106615166995	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	12270	0.5941897252150972	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	8416	0.40755507150857845	No Hit
TCCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	5099	0.24692529819655912	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	3678	0.17811163890310738	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	3619	0.1752544918951456	No Hit
TTCCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	3410	0.16513341181609464	No Hit
TGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCTT	2642	0.12794207449211792	Illumina Single End Adapter 2 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	2552	0.12358371464946437	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTC	2546	0.12329315732662081	No Hit
GCCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	2364	0.11447958520036591	No Hit
TTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	2152	0.10421322645989316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	20	7.034592E-4	45.000004	17
GATCGAA	25	3.8918886E-5	45.000004	9
TAGACGT	20	7.034592E-4	45.000004	44
CCCTACG	20	7.034592E-4	45.000004	11
AGCCCGT	20	7.034592E-4	45.000004	34
CGTTGAT	30	2.1663454E-6	45.000004	25
TAGCGAT	20	7.034592E-4	45.000004	28
CGCGAGC	20	7.034592E-4	45.000004	17
GCGCAAT	50	2.1827873E-11	45.000004	22
CCCGTTT	20	7.034592E-4	45.000004	16
GCCGATC	80	0.0	45.000004	9
ACGGCTC	20	7.034592E-4	45.000004	16
CTACGAC	20	7.034592E-4	45.000004	13
CAAATCG	30	2.1663454E-6	45.000004	13
CGCAGTA	25	3.8918886E-5	45.000004	37
CGAATCG	20	7.034592E-4	45.000004	15
CACGTAG	60	0.0	45.000004	25
TAGTGCG	25	3.8918886E-5	45.000004	1
TATCGTG	20	7.034592E-4	45.000004	1
CAATACG	20	7.034592E-4	45.000004	21