SRR2935341.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935341.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	540166
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	2544	0.470966332571839	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	2513	0.46522735603499665	No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	2081	0.3852519410699674	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	1794	0.3321201260353299	No Hit
TGTTTGGGGTGGTATCAAACCAAGCAGAGACTTTGGTGCTGGTTGGAAACA	893	0.16531954991613687	No Hit
TCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	829	0.1534713402916881	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGC	766	0.14180825894262133	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCG	624	0.11552004383837561	No Hit
TGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	566	0.1047826038662189	No Hit
TTACCTGGGTACCTTGATTATGTTAGTTGGCACTGGATTCCAAATTCTACC	564	0.10441234731545489	No Hit
TTTCTTGGGGGACAATAGGAATTGAACCTACACTTAAGAATTCAAAATTCT	548	0.1014502949093427	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTCG	20	7.029961E-4	45.000004	1
GTCATAG	20	7.029961E-4	45.000004	45
CGGGTGC	55	1.8189894E-12	45.000004	6
AGCGTAA	20	7.029961E-4	45.000004	11
TACCCTC	20	7.029961E-4	45.000004	23
ACGCCCG	20	7.029961E-4	45.000004	37
AATTTCG	20	7.029961E-4	45.000004	26
AATCACG	20	7.029961E-4	45.000004	21
TACTTAG	20	7.029961E-4	45.000004	29
GATCGAG	20	7.029961E-4	45.000004	12
GTTTCGT	20	7.029961E-4	45.000004	36
CAACGGT	20	7.029961E-4	45.000004	42
TTAGCGA	20	7.029961E-4	45.000004	27
CCCTACC	20	7.029961E-4	45.000004	21
CGTTGTG	20	7.029961E-4	45.000004	13
GACGTCA	30	2.1633568E-6	45.000004	10
GAGTAGA	20	7.029961E-4	45.000004	32
CGCATCG	20	7.029961E-4	45.000004	27
TCTTACG	55	1.8189894E-12	45.000004	1
TTCACGT	30	2.1633568E-6	45.000004	17