SRR2935338.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935338.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2950406
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	46933	1.5907302249249764	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	42231	1.4313623277609928	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	37277	1.2634532332160389	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCCAATT	15745	0.5336553681086603	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	9724	0.3295817592561837	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTC	9458	0.3205660509096036	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCT	9148	0.31005902238539373	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	8923	0.3024329532952414	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTA	8636	0.2927054785002471	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	7737	0.2622350957800384	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	7329	0.2484064904965622	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	5610	0.1901433226477983	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	5067	0.17173907591023066	No Hit
GAATATGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	4350	0.1474373357429452	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGT	3149	0.10673107362173205	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2959	0.10029128194560341	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACCG	20	7.035087E-4	45.0	45
CGATCGA	380	0.0	43.81579	41
TAATACG	1800	0.0	43.5	4
AATACGG	1845	0.0	42.439026	5
CGTATGG	350	0.0	42.428574	2
TACGGGA	1470	0.0	42.39796	4
CCGATCG	395	0.0	42.151897	40
TACGGCT	6105	0.0	42.08845	7
CGCATGG	290	0.0	41.896553	2
ACGGGAT	995	0.0	41.83417	5
CGATGAA	9795	0.0	41.761105	19
TATGGGA	4790	0.0	41.7119	4
CGCGATC	65	0.0	41.53846	43
TGAATGA	10750	0.0	41.086044	22
CCGATGA	9730	0.0	41.06886	18
ATGAATG	10840	0.0	41.056274	21
ACGGCTG	6280	0.0	40.915604	8
GATGAAT	10995	0.0	40.804913	20
TTATGGG	5905	0.0	40.73243	3
CTACGGG	790	0.0	40.158226	3