SRR2935337.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935337.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1506841
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT	5786	0.38398211888314693	No Hit
TCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	5503	0.36520110615519485	No Hit
CCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	4978	0.3303600048047538	No Hit
GCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	4811	0.3192772163751849	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	2153	0.1428816975380946	No Hit
TCCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTG	2073	0.1375725773323131	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	30	2.1659525E-6	45.000004	8
ATCGTTA	30	2.1659525E-6	45.000004	38
CGTCGCA	30	2.1659525E-6	45.000004	14
GTCGATG	40	6.8175723E-9	45.0	1
ACGTTTA	25	3.891386E-5	45.0	17
TTAGCCG	25	3.891386E-5	45.0	15
AACCCGC	25	3.891386E-5	45.0	24
ATTACGC	20	7.033987E-4	45.0	41
TACGGGT	170	0.0	45.0	4
CGCGAAA	25	3.891386E-5	45.0	23
AGACGGG	20	7.033987E-4	45.0	3
CGTAGTC	25	3.891386E-5	45.0	31
GTATGCG	20	7.033987E-4	45.0	1
TGTTACG	220	0.0	45.0	1
TTACGTA	20	7.033987E-4	45.0	11
ACCCGTA	20	7.033987E-4	45.0	17
CAATCGA	25	3.891386E-5	45.0	40
TAGTCGT	20	7.033987E-4	45.0	37
GCGTACC	20	7.033987E-4	45.0	43
ACGACTA	20	7.033987E-4	45.0	10