SRR2935336.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935336.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	958692
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	6212	0.6479661872634798	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT	4817	0.5024554288551485	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	3246	0.3385863238662678	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	2979	0.31073587763327537	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTG	1332	0.1389393048027938	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	1120	0.11682584187622301	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1030	0.10743805101116938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCA	20	7.0327E-4	45.0	13
ACCGGTA	45	3.8380676E-10	45.0	41
CGAACTT	20	7.0327E-4	45.0	31
GATCGAC	20	7.0327E-4	45.0	9
CTCCGAC	40	6.8139343E-9	45.0	17
GAATGCG	20	7.0327E-4	45.0	18
ACGTTGA	25	3.89032E-5	45.0	26
CTATACG	20	7.0327E-4	45.0	12
ATTACGT	25	3.89032E-5	45.0	16
CACGCAT	20	7.0327E-4	45.0	14
CGACCGG	20	7.0327E-4	45.0	33
ATTCGTC	35	1.211647E-7	45.0	32
CACGAAG	20	7.0327E-4	45.0	42
TAACGAT	20	7.0327E-4	45.0	11
TAACGAA	25	3.89032E-5	45.0	19
CGACAAA	20	7.0327E-4	45.0	40
CATTACG	20	7.0327E-4	45.0	19
CGTTAGA	25	3.89032E-5	45.0	23
ACGATTC	20	7.0327E-4	45.0	10
ACGATAG	20	7.0327E-4	45.0	13