SRR2935334.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935334.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	757943
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	3589	0.4735184571926913	TruSeq Adapter, Index 27 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	3217	0.42443824931426244	TruSeq Adapter, Index 27 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	3210	0.4235146970154748	TruSeq Adapter, Index 27 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT	2964	0.39105843051522343	TruSeq Adapter, Index 20 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	2351	0.310181636349963	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTC	2225	0.29355769497178547	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	2151	0.28379442781317327	No Hit
TCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG	1343	0.17719010532454288	No Hit
TTCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT	883	0.11649952568992655	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTT	804	0.10607657831789462	No Hit
GCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG	773	0.10198656099469222	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGC	25	3.889543E-5	45.000004	12
CGACGTC	25	3.889543E-5	45.000004	42
TTAGCTA	25	3.889543E-5	45.000004	35
CTATCCG	25	3.889543E-5	45.000004	1
CGCATTG	25	3.889543E-5	45.000004	27
TAAACGG	25	3.889543E-5	45.000004	2
CGTTATG	25	3.889543E-5	45.000004	42
TACGCTT	25	3.889543E-5	45.000004	18
CTAGTAT	25	3.889543E-5	45.000004	19
TACGACA	25	3.889543E-5	45.000004	32
AACGCCA	65	0.0	45.000004	33
AGTTCGC	25	3.889543E-5	45.000004	31
TCCCGTA	25	3.889543E-5	45.000004	27
GCAGCTA	55	1.8189894E-12	45.000004	9
CCGCCTA	25	3.889543E-5	45.000004	31
TTCGATG	65	0.0	45.000004	1
TGTCGCG	45	3.8380676E-10	45.000004	1
CTAGGCA	45	3.8380676E-10	45.000004	4
ATCGCGC	25	3.889543E-5	45.000004	23
GTCGGTT	25	3.889543E-5	45.000004	12