SRR2935333.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935333.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1014334
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	3327	0.3279984699319948	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGCT	2957	0.29152133320977114	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	2720	0.26815624833634677	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	2374	0.2340451961582674	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1219	0.12017737747132601	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1103	0.10874130217462888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	30	2.1652486E-6	45.000004	1
AGATTCG	30	2.1652486E-6	45.000004	20
CTTTACG	130	0.0	45.000004	1
CCTTACG	20	7.032894E-4	45.0	1
GTCGAGA	20	7.032894E-4	45.0	10
GATCGAC	25	3.890481E-5	45.0	9
TACCACG	20	7.032894E-4	45.0	20
CGAAACT	20	7.032894E-4	45.0	15
ACGTTAG	20	7.032894E-4	45.0	36
CGTGATG	20	7.032894E-4	45.0	17
CGGTTAT	20	7.032894E-4	45.0	29
CACGCTC	20	7.032894E-4	45.0	38
GCACGCT	20	7.032894E-4	45.0	9
CCGCTTA	20	7.032894E-4	45.0	41
CGTTAGA	25	3.890481E-5	45.0	35
TACGCTA	20	7.032894E-4	45.0	18
TCGGACA	20	7.032894E-4	45.0	24
CTACGTT	25	3.890481E-5	45.0	8
ACGTGCC	20	7.032894E-4	45.0	20
TCGTCAT	20	7.032894E-4	45.0	22