SRR2935329.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935329.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1064528
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC	5400	0.5072670704763049	TruSeq Adapter, Index 20 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGCT	3937	0.3698352697157801	TruSeq Adapter, Index 23 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC	3733	0.3506718470533419	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC	3282	0.308305652833932	TruSeq Adapter, Index 20 (95% over 22bp)
TCCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTG	1782	0.16739813325718064	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGC	1210	0.11366539912524612	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCG	1121	0.10530488629702554	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAA	20	7.0330506E-4	45.000004	36
ACCGGTA	20	7.0330506E-4	45.000004	41
TCGCAAT	20	7.0330506E-4	45.000004	17
GTCTACG	40	6.8139343E-9	45.000004	1
CGACACG	20	7.0330506E-4	45.000004	16
TGACGCG	20	7.0330506E-4	45.000004	25
CCGTCCG	20	7.0330506E-4	45.000004	1
TCGGCAC	20	7.0330506E-4	45.000004	20
TTTCACG	65	0.0	45.000004	1
TCGTGCA	20	7.0330506E-4	45.000004	23
CGGATTG	20	7.0330506E-4	45.000004	24
GTCGTAC	20	7.0330506E-4	45.000004	22
AACGACG	40	6.8139343E-9	45.000004	11
TCCGTCG	30	2.1653505E-6	45.000004	1
TTACGCT	20	7.0330506E-4	45.000004	22
CACGTAT	20	7.0330506E-4	45.000004	34
TACAGCG	20	7.0330506E-4	45.000004	30
CCCGGTA	20	7.0330506E-4	45.000004	39
CGATAGT	20	7.0330506E-4	45.000004	11
ATCGCTC	30	2.1653505E-6	45.000004	28