Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935328.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1289657 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC | 5119 | 0.3969272449961502 | No Hit |
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC | 4840 | 0.37529358581390243 | No Hit |
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC | 4705 | 0.36482568620958905 | No Hit |
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT | 4524 | 0.3507909467401022 | Illumina Single End Adapter 2 (95% over 21bp) |
TCCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG | 2029 | 0.15732865405297689 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGACG | 20 | 7.0336065E-4 | 45.000004 | 45 |
ATCTCCG | 20 | 7.0336065E-4 | 45.000004 | 1 |
GCGACGC | 20 | 7.0336065E-4 | 45.000004 | 33 |
CGAAAGA | 20 | 7.0336065E-4 | 45.000004 | 42 |
CTATCGA | 60 | 0.0 | 45.000004 | 42 |
CGGCACG | 35 | 1.2120836E-7 | 45.000004 | 10 |
CAACCGA | 20 | 7.0336065E-4 | 45.000004 | 25 |
CGCGACA | 20 | 7.0336065E-4 | 45.000004 | 18 |
CTAACCG | 20 | 7.0336065E-4 | 45.000004 | 26 |
CGGATAG | 30 | 2.1657088E-6 | 45.000004 | 33 |
CGCTAGA | 20 | 7.0336065E-4 | 45.000004 | 12 |
GTGTCGT | 30 | 2.1657088E-6 | 45.000004 | 15 |
CTACCCG | 20 | 7.0336065E-4 | 45.000004 | 29 |
CGTCGTT | 20 | 7.0336065E-4 | 45.000004 | 30 |
CGTAACG | 20 | 7.0336065E-4 | 45.000004 | 16 |
TCAAGCG | 30 | 2.1657088E-6 | 45.000004 | 17 |
TATCGCC | 30 | 2.1657088E-6 | 45.000004 | 25 |
TCGAATA | 20 | 7.0336065E-4 | 45.000004 | 13 |
CCGTTCA | 20 | 7.0336065E-4 | 45.000004 | 27 |
TCGAAAC | 30 | 2.1657088E-6 | 45.000004 | 34 |