FastQCFastQC Report
Sat 14 Jan 2017
SRR2935328.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935328.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1289657
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC51190.3969272449961502No Hit
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC48400.37529358581390243No Hit
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC47050.36482568620958905No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT45240.3507909467401022Illumina Single End Adapter 2 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG20290.15732865405297689No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGACG207.0336065E-445.00000445
ATCTCCG207.0336065E-445.0000041
GCGACGC207.0336065E-445.00000433
CGAAAGA207.0336065E-445.00000442
CTATCGA600.045.00000442
CGGCACG351.2120836E-745.00000410
CAACCGA207.0336065E-445.00000425
CGCGACA207.0336065E-445.00000418
CTAACCG207.0336065E-445.00000426
CGGATAG302.1657088E-645.00000433
CGCTAGA207.0336065E-445.00000412
GTGTCGT302.1657088E-645.00000415
CTACCCG207.0336065E-445.00000429
CGTCGTT207.0336065E-445.00000430
CGTAACG207.0336065E-445.00000416
TCAAGCG302.1657088E-645.00000417
TATCGCC302.1657088E-645.00000425
TCGAATA207.0336065E-445.00000413
CCGTTCA207.0336065E-445.00000427
TCGAAAC302.1657088E-645.00000434