SRR2935328.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935328.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1289657
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	5119	0.3969272449961502	No Hit
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	4840	0.37529358581390243	No Hit
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	4705	0.36482568620958905	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	4524	0.3507909467401022	Illumina Single End Adapter 2 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG	2029	0.15732865405297689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	20	7.0336065E-4	45.000004	45
ATCTCCG	20	7.0336065E-4	45.000004	1
GCGACGC	20	7.0336065E-4	45.000004	33
CGAAAGA	20	7.0336065E-4	45.000004	42
CTATCGA	60	0.0	45.000004	42
CGGCACG	35	1.2120836E-7	45.000004	10
CAACCGA	20	7.0336065E-4	45.000004	25
CGCGACA	20	7.0336065E-4	45.000004	18
CTAACCG	20	7.0336065E-4	45.000004	26
CGGATAG	30	2.1657088E-6	45.000004	33
CGCTAGA	20	7.0336065E-4	45.000004	12
GTGTCGT	30	2.1657088E-6	45.000004	15
CTACCCG	20	7.0336065E-4	45.000004	29
CGTCGTT	20	7.0336065E-4	45.000004	30
CGTAACG	20	7.0336065E-4	45.000004	16
TCAAGCG	30	2.1657088E-6	45.000004	17
TATCGCC	30	2.1657088E-6	45.000004	25
TCGAATA	20	7.0336065E-4	45.000004	13
CCGTTCA	20	7.0336065E-4	45.000004	27
TCGAAAC	30	2.1657088E-6	45.000004	34