FastQCFastQC Report
Sat 14 Jan 2017
SRR2935327.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935327.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1186207
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT53590.45177612339161716No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC49760.4194883355097382No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC48870.41198542918731723No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC35420.29859881116870834No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC33440.2819069521592774No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG15770.13294475584784105No Hit
TCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG14790.12468312866135504No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAATA253.8908816E-545.09
GCGAAAA253.8908816E-545.013
TAGGTAC207.033379E-445.023
CGCGACT253.8908816E-545.013
CTAACGA207.033379E-445.041
TACGATC406.8157533E-945.011
TATTCCG207.033379E-445.014
GTCACGA207.033379E-445.02
TGTTACG406.8157533E-945.01
CTCGACG253.8908816E-545.023
CGTCGGT207.033379E-445.026
GCGCTTA207.033379E-445.010
TCGCGAA253.8908816E-545.012
ACGACCG406.8157533E-945.018
TACCGTT207.033379E-445.039
GTACGCC207.033379E-445.09
ACGAACG900.045.021
CGAATAT1300.043.2692314
TCCGATA1200.043.12500414
CGATAAC950.042.6315816