Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935327.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1186207 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT | 5359 | 0.45177612339161716 | No Hit |
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC | 4976 | 0.4194883355097382 | No Hit |
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC | 4887 | 0.41198542918731723 | No Hit |
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC | 3542 | 0.29859881116870834 | No Hit |
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC | 3344 | 0.2819069521592774 | No Hit |
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG | 1577 | 0.13294475584784105 | No Hit |
TCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG | 1479 | 0.12468312866135504 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGAATA | 25 | 3.8908816E-5 | 45.0 | 9 |
GCGAAAA | 25 | 3.8908816E-5 | 45.0 | 13 |
TAGGTAC | 20 | 7.033379E-4 | 45.0 | 23 |
CGCGACT | 25 | 3.8908816E-5 | 45.0 | 13 |
CTAACGA | 20 | 7.033379E-4 | 45.0 | 41 |
TACGATC | 40 | 6.8157533E-9 | 45.0 | 11 |
TATTCCG | 20 | 7.033379E-4 | 45.0 | 14 |
GTCACGA | 20 | 7.033379E-4 | 45.0 | 2 |
TGTTACG | 40 | 6.8157533E-9 | 45.0 | 1 |
CTCGACG | 25 | 3.8908816E-5 | 45.0 | 23 |
CGTCGGT | 20 | 7.033379E-4 | 45.0 | 26 |
GCGCTTA | 20 | 7.033379E-4 | 45.0 | 10 |
TCGCGAA | 25 | 3.8908816E-5 | 45.0 | 12 |
ACGACCG | 40 | 6.8157533E-9 | 45.0 | 18 |
TACCGTT | 20 | 7.033379E-4 | 45.0 | 39 |
GTACGCC | 20 | 7.033379E-4 | 45.0 | 9 |
ACGAACG | 90 | 0.0 | 45.0 | 21 |
CGAATAT | 130 | 0.0 | 43.26923 | 14 |
TCCGATA | 120 | 0.0 | 43.125004 | 14 |
CGATAAC | 95 | 0.0 | 42.63158 | 16 |