SRR2935327.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935327.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1186207
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	5359	0.45177612339161716	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	4976	0.4194883355097382	No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	4887	0.41198542918731723	No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	3542	0.29859881116870834	No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	3344	0.2819069521592774	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1577	0.13294475584784105	No Hit
TCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	1479	0.12468312866135504	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATA	25	3.8908816E-5	45.0	9
GCGAAAA	25	3.8908816E-5	45.0	13
TAGGTAC	20	7.033379E-4	45.0	23
CGCGACT	25	3.8908816E-5	45.0	13
CTAACGA	20	7.033379E-4	45.0	41
TACGATC	40	6.8157533E-9	45.0	11
TATTCCG	20	7.033379E-4	45.0	14
GTCACGA	20	7.033379E-4	45.0	2
TGTTACG	40	6.8157533E-9	45.0	1
CTCGACG	25	3.8908816E-5	45.0	23
CGTCGGT	20	7.033379E-4	45.0	26
GCGCTTA	20	7.033379E-4	45.0	10
TCGCGAA	25	3.8908816E-5	45.0	12
ACGACCG	40	6.8157533E-9	45.0	18
TACCGTT	20	7.033379E-4	45.0	39
GTACGCC	20	7.033379E-4	45.0	9
ACGAACG	90	0.0	45.0	21
CGAATAT	130	0.0	43.26923	14
TCCGATA	120	0.0	43.125004	14
CGATAAC	95	0.0	42.63158	16