SRR2935321.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935321.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1095360
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT	4728	0.4316389132340053	No Hit
TCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	4205	0.38389205375401697	No Hit
CCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	4012	0.36627227578147825	No Hit
GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	3401	0.31049152789950335	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	2354	0.21490651475314054	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTG	1588	0.14497516798130294	No Hit
TTTTTTGGGATTTTACTTCTACTCACAATTCTAGAATTTGCAGTAGCATTA	1275	0.11640008764241894	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1255	0.11457420391469471	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTG	1232	0.11247443762781187	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCACG	30	2.1654068E-6	45.000004	1
CGACGGT	30	2.1654068E-6	45.000004	28
CTACGAT	30	2.1654068E-6	45.000004	44
ACCGTAC	30	2.1654068E-6	45.000004	11
GAACCGC	30	2.1654068E-6	45.000004	9
CCGCCGT	30	2.1654068E-6	45.000004	38
CGAACAG	20	7.0331414E-4	45.0	39
CGTATGG	195	0.0	45.0	2
CGAAATG	25	3.890685E-5	45.0	19
GATCGAA	35	1.2118653E-7	45.0	9
CTATCGT	25	3.890685E-5	45.0	31
ATCAGCG	20	7.0331414E-4	45.0	12
CGTTGCA	20	7.0331414E-4	45.0	41
GATCCGA	20	7.0331414E-4	45.0	10
GGTCCAC	35	1.2118653E-7	45.0	8
CGACCTA	25	3.890685E-5	45.0	29
ACCGAAC	20	7.0331414E-4	45.0	11
CGACCGA	20	7.0331414E-4	45.0	38
TCGATCC	20	7.0331414E-4	45.0	17
TATTGCG	80	0.0	45.0	1