SRR2935319.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935319.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1020615
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	3554	0.3482214155190743	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	3311	0.3244122416386198	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGCT	3114	0.30511015417174936	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	2999	0.2938424381377895	Illumina Single End Adapter 2 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTG	1445	0.141581301470192	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATT	30	2.1652613E-6	45.000004	28
TATTACG	30	2.1652613E-6	45.000004	1
TCGTAAT	30	2.1652613E-6	45.000004	39
ACCCGTG	30	2.1652613E-6	45.000004	18
AGTCGAT	30	2.1652613E-6	45.000004	27
AACCGCA	20	7.032916E-4	45.0	10
TACCCGA	20	7.032916E-4	45.0	40
AAATCGT	25	3.8904982E-5	45.0	38
CGAACAG	20	7.032916E-4	45.0	33
AATTTCG	25	3.8904982E-5	45.0	39
CTCCGTA	20	7.032916E-4	45.0	22
CGTATCC	20	7.032916E-4	45.0	27
GTCGACA	20	7.032916E-4	45.0	30
CGACGTA	20	7.032916E-4	45.0	26
GCGGTAT	25	3.8904982E-5	45.0	39
GCGAAAT	20	7.032916E-4	45.0	41
GTTTACG	40	6.8139343E-9	45.0	1
CGTTGTA	20	7.032916E-4	45.0	31
GGCGTAA	25	3.8904982E-5	45.0	35
CGTCTTA	25	3.8904982E-5	45.0	13