SRR2935315.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935315.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1108809
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	9453	0.8525363701052211	No Hit
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT	8897	0.8023924769730404	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	8597	0.7753364195276192	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	6016	0.5425641386388458	No Hit
TCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	3232	0.2914839255453374	No Hit
TTCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCT	2245	0.20246949654990176	No Hit
GCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1712	0.15439990115520347	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCC	1622	0.1462830839215771	No Hit
TTTCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	1610	0.14520084162376026	No Hit
TGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCTT	1523	0.13735458496458813	Illumina Single End Adapter 1 (95% over 22bp)
TGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1461	0.13176299975920108	No Hit
TTCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1434	0.12932795458911317	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	1303	0.11751347617127926	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1171	0.10560881089529395	No Hit
TCTGACTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1133	0.10218171028554063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	35	1.2118835E-7	45.000004	8
ACCCTCG	45	3.8562575E-10	45.000004	31
AACGGTA	35	1.2118835E-7	45.000004	16
GGAACCG	45	3.8562575E-10	45.000004	8
ACTACGG	35	1.2118835E-7	45.000004	2
GTCAATC	35	1.2118835E-7	45.000004	17
TAAGGGT	45	3.8562575E-10	45.000004	4
TGCTACG	35	1.2118835E-7	45.000004	1
GTACGAC	35	1.2118835E-7	45.000004	9
TGGTACG	35	1.2118835E-7	45.000004	1
ACGGTAA	35	1.2118835E-7	45.000004	17
TCCGGAT	40	6.8139343E-9	45.0	25
TCGCCCA	20	7.0331787E-4	45.0	15
AGATCCG	20	7.0331787E-4	45.0	28
ACCGGAT	20	7.0331787E-4	45.0	32
GTCGACT	20	7.0331787E-4	45.0	22
GATCGAT	25	3.890717E-5	45.0	9
CGAAACC	40	6.8139343E-9	45.0	22
CCCTATT	20	7.0331787E-4	45.0	14
GACCGTT	25	3.890717E-5	45.0	9