##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935315.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1108809 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.223898795915254 33.0 31.0 34.0 30.0 34.0 2 32.37659777292573 34.0 31.0 34.0 30.0 34.0 3 32.432710232330365 34.0 31.0 34.0 30.0 34.0 4 35.93170690353343 37.0 35.0 37.0 35.0 37.0 5 31.82263221167938 37.0 35.0 37.0 0.0 37.0 6 33.53729993172855 37.0 35.0 37.0 17.0 37.0 7 35.26270980845213 37.0 35.0 37.0 32.0 37.0 8 35.79417194485254 37.0 35.0 37.0 35.0 37.0 9 37.85778704898679 39.0 38.0 39.0 35.0 39.0 10 37.47850711889965 39.0 37.0 39.0 35.0 39.0 11 37.3848976694814 39.0 37.0 39.0 35.0 39.0 12 37.21065936513863 39.0 37.0 39.0 34.0 39.0 13 37.14650855106696 39.0 37.0 39.0 33.0 39.0 14 38.22662965398008 40.0 38.0 41.0 33.0 41.0 15 38.32630597334617 40.0 38.0 41.0 34.0 41.0 16 38.4121007315056 40.0 38.0 41.0 34.0 41.0 17 38.44437139308934 40.0 38.0 41.0 34.0 41.0 18 38.44459325276039 40.0 38.0 41.0 34.0 41.0 19 38.46457956239533 40.0 38.0 41.0 34.0 41.0 20 38.36773240476944 40.0 37.0 41.0 34.0 41.0 21 38.32308269503584 40.0 37.0 41.0 34.0 41.0 22 38.30911455444536 40.0 37.0 41.0 34.0 41.0 23 38.27595555230883 40.0 37.0 41.0 34.0 41.0 24 38.23769287586951 40.0 37.0 41.0 34.0 41.0 25 38.13355140515635 40.0 37.0 41.0 34.0 41.0 26 38.04663562435009 40.0 37.0 41.0 34.0 41.0 27 37.99221326666721 40.0 37.0 41.0 34.0 41.0 28 38.0138797574695 40.0 37.0 41.0 34.0 41.0 29 37.966854525892195 40.0 37.0 41.0 34.0 41.0 30 37.90365067383111 40.0 36.0 41.0 34.0 41.0 31 37.70467321242883 40.0 36.0 41.0 33.0 41.0 32 37.72812269741678 40.0 36.0 41.0 33.0 41.0 33 37.651591031458075 39.0 36.0 41.0 33.0 41.0 34 37.68215716142275 39.0 36.0 41.0 33.0 41.0 35 37.56460129742814 39.0 36.0 41.0 33.0 41.0 36 37.44663327949178 39.0 35.0 41.0 33.0 41.0 37 37.49054165325137 39.0 36.0 41.0 33.0 41.0 38 37.58146263242813 39.0 36.0 41.0 33.0 41.0 39 37.582770341871324 39.0 36.0 41.0 33.0 41.0 40 37.57421160903276 39.0 36.0 41.0 33.0 41.0 41 37.465870136335475 39.0 36.0 41.0 33.0 41.0 42 37.32497210971412 39.0 35.0 41.0 32.0 41.0 43 37.257768470494014 39.0 35.0 41.0 32.0 41.0 44 37.32090648614865 39.0 35.0 41.0 33.0 41.0 45 37.38568860822738 39.0 35.0 41.0 33.0 41.0 46 37.29205751396318 39.0 35.0 41.0 33.0 41.0 47 37.22585675260572 39.0 35.0 41.0 32.0 41.0 48 37.19258682063367 39.0 35.0 41.0 32.0 41.0 49 37.19363479192539 39.0 35.0 41.0 32.0 41.0 50 37.15506638203694 39.0 35.0 41.0 32.0 41.0 51 36.58217961795043 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 4.0 11 11.0 12 7.0 13 7.0 14 9.0 15 12.0 16 23.0 17 45.0 18 95.0 19 138.0 20 269.0 21 485.0 22 771.0 23 1285.0 24 1926.0 25 2875.0 26 4177.0 27 5429.0 28 7159.0 29 9791.0 30 13279.0 31 18592.0 32 26251.0 33 39406.0 34 63363.0 35 92555.0 36 98486.0 37 155021.0 38 258332.0 39 308763.0 40 238.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.99026162305681 4.447745283452786 58.79560862150289 14.766384471987513 2 17.915619371776383 3.93539374229466 56.45345591531093 21.695530970618023 3 18.854284191416195 3.712992950093298 55.567730781406 21.864992077084512 4 18.54359046508461 3.8478223030296475 53.596065688500005 24.01252154338574 5 15.14787488196795 15.99202387426509 47.71552178959587 21.144579454171097 6 19.18806575343454 5.384786739645872 55.78463017526012 19.642517331659466 7 79.81717320115548 1.542736395537915 12.134912324845848 6.505178078460763 8 82.55867331524185 1.662865290595585 8.668129497505884 7.110331896656683 9 77.85028801173151 3.7507812436587367 11.720864459072752 6.678066285537004 10 35.205161574265716 25.767287242437607 20.878438035766305 18.149113147530368 11 24.542188961308938 28.939339417338783 26.399046183788187 20.11942543756409 12 22.15142553857337 23.918366463475678 33.67126349082664 20.258944507124312 13 20.974216479123093 26.17637483101237 34.26920236037046 18.58020632949408 14 17.426355666305017 27.807494347538665 33.62355464286455 21.142595343291767 15 14.339439885498765 26.40436720841912 38.22515870632363 21.03103419975848 16 15.774312798687602 26.510246579888875 33.27723710756316 24.43820351386037 17 16.4103105223713 25.84241289527773 30.770944319535648 26.976332262815326 18 17.56010277694355 24.638418338956484 34.38346910964828 23.418009774451686 19 19.486854814490144 26.89561502476982 31.373663092561475 22.24386706817856 20 20.627538196389096 28.67770734184156 30.421921178489715 20.272833283279628 21 20.097149283600693 28.579133105882075 31.136201095048833 20.1875165154684 22 19.04223360380372 26.174480906991192 28.721538154903143 26.061747334301938 23 17.82209559987338 26.528283951519153 28.56073498681919 27.08888546178828 24 19.677960766912967 25.92222826474172 29.95258876866981 24.447222199675508 25 16.703598185079667 28.97324967600371 28.149212353074333 26.173939785842286 26 15.79153848859452 30.59976966276428 29.553241360775388 24.05545048786581 27 17.76311339464236 30.7422648986435 29.420396118718372 22.07422558799577 28 15.078701561765822 28.257256209139715 33.446427653455196 23.217614575639267 29 18.62187265796003 26.80109919742715 30.688874278617867 23.888153865994955 30 22.970953518595177 28.898214210021745 27.93222277236206 20.19860949902102 31 23.246474370247718 29.91858832314673 26.48066529041521 20.354272016190343 32 24.526225887416135 29.461431139177265 25.352968816090055 20.65937415731654 33 23.729334808790334 27.032608862301803 27.425282442693018 21.81277388621485 34 21.536531539697098 25.83303346202998 29.29702049676725 23.33341450150567 35 21.787701939648755 27.18150736510977 26.969928995886576 24.060861699354895 36 22.609664964840654 28.356642126822564 29.617003469488434 19.41668943884835 37 21.25577985027178 27.650839774929675 32.05258976072525 19.0407906140733 38 23.20958794526379 27.11197329747504 28.70395171756362 20.974487039697546 39 25.586101844411434 23.375351390546072 30.12313211743411 20.91541464760838 40 27.787563051887204 23.331610764342642 27.940429776453833 20.94039640731632 41 23.38220559176558 25.2884852125118 26.338079867677845 24.991229328044774 42 21.705000590723923 25.596383146240697 29.715307144873464 22.98330911816192 43 21.713838902822758 24.940544313763688 31.106800179291472 22.23881660412208 44 21.290772351234523 24.278482588074233 28.890097392788118 25.540647667903126 45 23.417919587593534 24.648068332778685 26.172496796111865 25.76151528351592 46 25.372178616876305 25.129846529023485 28.822276875458265 20.67569797864195 47 20.881865136376057 24.96922373465583 32.674608521395484 21.47430260757263 48 21.359675110862195 23.174685631159196 32.23945693081496 23.22618232716365 49 24.34594235797148 20.374383685558108 33.77046903479319 21.50920492167722 50 24.51792869646621 20.374564059274412 29.932116351869436 25.17539089238994 51 22.654307459625596 20.678764331819096 26.988417301807615 29.67851090674769 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 172.0 1 345.5 2 519.0 3 1050.5 4 1582.0 5 1140.0 6 698.0 7 938.5 8 1179.0 9 1581.0 10 1983.0 11 2512.0 12 3041.0 13 3279.5 14 3518.0 15 3901.0 16 4284.0 17 3781.0 18 3278.0 19 3673.0 20 4068.0 21 3958.0 22 3848.0 23 4085.5 24 4323.0 25 5753.0 26 8161.0 27 9139.0 28 11080.5 29 13022.0 30 15516.5 31 18011.0 32 20275.0 33 22539.0 34 25817.0 35 29095.0 36 32897.0 37 36699.0 38 40080.0 39 43461.0 40 52299.0 41 61137.0 42 70422.0 43 79707.0 44 92589.5 45 105472.0 46 124644.0 47 143816.0 48 156632.0 49 169448.0 50 153444.5 51 137441.0 52 106015.5 53 74590.0 54 60280.5 55 45971.0 56 36138.5 57 26306.0 58 21947.0 59 17588.0 60 14902.5 61 12217.0 62 10144.5 63 8072.0 64 7133.0 65 6194.0 66 4964.5 67 3735.0 68 2750.5 69 1766.0 70 1570.5 71 1375.0 72 1244.5 73 1114.0 74 906.5 75 465.0 76 231.0 77 195.0 78 159.0 79 111.5 80 64.0 81 51.0 82 38.0 83 29.0 84 20.0 85 12.5 86 5.0 87 3.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1108809.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.528956578583024 #Duplication Level Percentage of deduplicated Percentage of total 1 63.86212650070278 16.9419558095312 2 13.724030214928229 7.281684033099848 3 6.259189483746416 4.981492980942965 4 3.7292582102667735 3.9573331652196586 5 2.4096692477456094 3.1963005421095043 6 1.6601498686178957 2.642522626710268 7 1.234397837400235 2.2923100640361334 8 0.8912355598528546 1.8914839574900408 9 0.68918534618754 1.6455031311244463 >10 4.467625366347381 24.05826461003195 >50 0.879008370520595 16.040533516455284 >100 0.17607386795538196 8.029427805841143 >500 0.012601031168819414 2.297581315628492 >1k 0.004086820919617107 1.7654242590397453 >5k 0.001362273639872369 2.9781821827393617 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC 9453 0.8525363701052211 No Hit CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT 8897 0.8023924769730404 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC 8597 0.7753364195276192 No Hit GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC 6016 0.5425641386388458 No Hit TCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG 3232 0.2914839255453374 No Hit TTCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCT 2245 0.20246949654990176 No Hit GCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG 1712 0.15439990115520347 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCC 1622 0.1462830839215771 No Hit TTTCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC 1610 0.14520084162376026 No Hit TGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCTT 1523 0.13735458496458813 Illumina Single End Adapter 1 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG 1461 0.13176299975920108 No Hit TTCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG 1434 0.12932795458911317 No Hit CGTTCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC 1303 0.11751347617127926 No Hit CGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG 1171 0.10560881089529395 No Hit TCTGACTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC 1133 0.10218171028554063 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8278251709717364 0.0 2 0.0 0.0 0.0 3.143553127725334 0.0 3 0.0 0.0 0.0 4.339250493096647 0.0 4 0.0 0.0 0.0 5.736605673294499 0.0 5 0.0 0.0 0.0 8.050890640317673 0.0 6 0.0 0.0 0.0 9.571260695034042 0.0 7 0.0 0.0 0.0 10.91513506834811 0.0 8 0.0 0.0 0.0 13.06257434779119 0.0 9 0.0 0.0 0.0 14.038756900421983 0.0 10 0.0 0.0 0.0 16.023048153469173 0.0 11 0.0 0.0 0.0 19.48721556192275 0.0 12 0.0 0.0 0.0 22.25045070882361 0.0 13 0.0 0.0 0.0 23.144202473104023 0.0 14 0.0 0.0 0.0 23.41620603728866 0.0 15 0.0 0.0 0.0 23.820694096097704 0.0 16 0.0 0.0 0.0 24.99727184754092 0.0 17 0.0 0.0 0.0 26.814987973582465 0.0 18 0.0 0.0 0.0 28.9337478321334 0.0 19 0.0 0.0 0.0 30.256969414930794 0.0 20 0.0 0.0 0.0 31.595342389897628 0.0 21 0.0 0.0 0.0 33.45797157129857 0.0 22 9.01868581514039E-5 0.0 0.0 35.21715642639986 0.0 23 9.01868581514039E-5 0.0 0.0 36.95253195094917 0.0 24 9.01868581514039E-5 0.0 0.0 38.14741763459712 0.0 25 9.01868581514039E-5 0.0 0.0 39.230742174711786 0.0 26 9.01868581514039E-5 0.0 0.0 40.12196870696396 0.0 27 9.01868581514039E-5 0.0 0.0 41.049269982476694 0.0 28 9.01868581514039E-5 0.0 0.0 41.93463436894903 0.0 29 9.01868581514039E-5 0.0 0.0 42.93192064638725 0.0 30 9.01868581514039E-5 0.0 0.0 43.985754083886405 0.0 31 9.01868581514039E-5 0.0 0.0 44.98249924017572 0.0 32 9.01868581514039E-5 0.0 0.0 45.88545006398758 0.0 33 9.01868581514039E-5 0.0 0.0 46.71111075036368 0.0 34 9.01868581514039E-5 0.0 0.0 47.55002890488804 0.0 35 9.01868581514039E-5 0.0 0.0 48.435844225651124 0.0 36 9.01868581514039E-5 0.0 0.0 49.24418903526216 0.0 37 9.01868581514039E-5 0.0 0.0 50.0114988244143 0.0 38 9.01868581514039E-5 0.0 0.0 50.77348758893552 0.0 39 9.01868581514039E-5 0.0 0.0 51.63901086661454 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 35 1.2118835E-7 45.000004 8 ACCCTCG 45 3.8562575E-10 45.000004 31 AACGGTA 35 1.2118835E-7 45.000004 16 GGAACCG 45 3.8562575E-10 45.000004 8 ACTACGG 35 1.2118835E-7 45.000004 2 GTCAATC 35 1.2118835E-7 45.000004 17 TAAGGGT 45 3.8562575E-10 45.000004 4 TGCTACG 35 1.2118835E-7 45.000004 1 GTACGAC 35 1.2118835E-7 45.000004 9 TGGTACG 35 1.2118835E-7 45.000004 1 ACGGTAA 35 1.2118835E-7 45.000004 17 TCCGGAT 40 6.8139343E-9 45.0 25 TCGCCCA 20 7.0331787E-4 45.0 15 AGATCCG 20 7.0331787E-4 45.0 28 ACCGGAT 20 7.0331787E-4 45.0 32 GTCGACT 20 7.0331787E-4 45.0 22 GATCGAT 25 3.890717E-5 45.0 9 CGAAACC 40 6.8139343E-9 45.0 22 CCCTATT 20 7.0331787E-4 45.0 14 GACCGTT 25 3.890717E-5 45.0 9 >>END_MODULE