##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935312.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 561993 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26260647374612 33.0 31.0 34.0 30.0 34.0 2 32.41640020427301 34.0 31.0 34.0 30.0 34.0 3 32.47496677004874 34.0 31.0 34.0 30.0 34.0 4 35.93056853021301 37.0 35.0 37.0 35.0 37.0 5 31.890765543343065 37.0 35.0 37.0 0.0 37.0 6 33.51552065595123 37.0 35.0 37.0 17.0 37.0 7 35.237006510757254 37.0 35.0 37.0 32.0 37.0 8 35.76637253488922 37.0 35.0 37.0 35.0 37.0 9 37.762569996423444 39.0 38.0 39.0 35.0 39.0 10 37.502936869320436 39.0 37.0 39.0 35.0 39.0 11 37.41399981850308 39.0 37.0 39.0 35.0 39.0 12 37.033594724489454 39.0 35.0 39.0 34.0 39.0 13 36.85906408086934 39.0 35.0 39.0 33.0 39.0 14 37.859738466493354 40.0 36.0 41.0 33.0 41.0 15 38.025872208372704 40.0 36.0 41.0 33.0 41.0 16 38.12842686652681 40.0 36.0 41.0 34.0 41.0 17 38.1725786620118 40.0 36.0 41.0 34.0 41.0 18 38.160631893991564 40.0 36.0 41.0 34.0 41.0 19 38.17576909320935 40.0 36.0 41.0 34.0 41.0 20 38.07020550078026 40.0 36.0 41.0 34.0 41.0 21 37.99531844702692 40.0 36.0 41.0 34.0 41.0 22 37.97724170941631 40.0 36.0 41.0 34.0 41.0 23 37.93632127090551 40.0 36.0 41.0 34.0 41.0 24 37.91353451021632 40.0 36.0 41.0 34.0 41.0 25 37.794559718715355 39.0 35.0 41.0 34.0 41.0 26 37.774918904683865 40.0 35.0 41.0 34.0 41.0 27 37.72617274592388 39.0 35.0 41.0 34.0 41.0 28 37.708391385657826 39.0 35.0 41.0 34.0 41.0 29 37.665058105705945 39.0 35.0 41.0 33.0 41.0 30 37.60027793940494 39.0 35.0 41.0 33.0 41.0 31 37.398857281140515 39.0 35.0 41.0 33.0 41.0 32 37.4077862179778 39.0 35.0 41.0 33.0 41.0 33 37.38428414588794 39.0 35.0 41.0 33.0 41.0 34 37.33588140777554 39.0 35.0 41.0 33.0 41.0 35 37.28380424667211 39.0 35.0 41.0 33.0 41.0 36 37.24029836670564 39.0 35.0 41.0 33.0 41.0 37 37.19697042489853 39.0 35.0 41.0 33.0 41.0 38 37.16135254353702 39.0 35.0 41.0 33.0 41.0 39 37.13375077625522 39.0 35.0 41.0 33.0 41.0 40 37.032238835715034 39.0 35.0 41.0 33.0 41.0 41 36.998514216369244 39.0 35.0 41.0 32.0 41.0 42 37.01640589829411 39.0 35.0 41.0 33.0 41.0 43 36.93683195342291 39.0 35.0 41.0 32.0 41.0 44 36.859820318046665 39.0 35.0 41.0 32.0 41.0 45 36.838949951333916 39.0 35.0 40.0 32.0 41.0 46 36.74650573939533 38.0 35.0 40.0 32.0 41.0 47 36.7031279749036 38.0 35.0 40.0 32.0 41.0 48 36.6832362680674 38.0 35.0 40.0 32.0 41.0 49 36.65280706343317 38.0 35.0 40.0 32.0 41.0 50 36.54677549364494 38.0 35.0 40.0 32.0 41.0 51 35.903810189806634 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 8.0 10 9.0 11 11.0 12 9.0 13 11.0 14 15.0 15 14.0 16 21.0 17 43.0 18 83.0 19 134.0 20 230.0 21 420.0 22 614.0 23 922.0 24 1406.0 25 2084.0 26 2785.0 27 3598.0 28 4406.0 29 5752.0 30 7611.0 31 10316.0 32 14692.0 33 22855.0 34 40114.0 35 58784.0 36 46806.0 37 71884.0 38 114575.0 39 151666.0 40 110.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.106134773920672 4.563579973416039 56.81921305069636 17.51107220196693 2 18.61090796504583 4.500233988679574 55.24428240209398 21.644575644180623 3 20.485486474030814 4.865007215392363 53.21721089052711 21.432295420049716 4 18.62549889411434 4.642050701699132 49.930515148765195 26.801935255421334 5 16.114969403533497 16.47315891834952 43.302140773995404 24.10973090412158 6 20.100250358990237 6.509689622468608 52.67236424652976 20.717695772011396 7 81.71276154685201 2.5398892868772385 10.136781063109327 5.610568103161427 8 82.87291834595804 2.714802497540005 8.070385218321224 6.341893938180725 9 76.82586793785687 5.621244392723753 10.902982777365553 6.649904892053815 10 41.77863425345156 25.06205593308102 16.58917459826012 16.57013521520731 11 32.832615352860266 23.054023804566963 24.670058167984298 19.443302674588473 12 28.919577290108595 19.515011752815425 29.73079735868596 21.834613598390014 13 23.508477863603282 25.22415759626899 31.679042265651 19.588322274476727 14 18.092040292316806 29.177231744879386 31.55679875016237 21.173929212641436 15 15.129192000612107 23.682145507150445 39.90334399182908 21.28531850040837 16 17.559293443156765 22.677506659335613 35.27090195073604 24.49229794677158 17 18.936534796696755 21.512011715448413 29.52421115565496 30.027242332199865 18 20.986560330822627 22.116823519154153 31.595411330746114 25.301204819277107 19 24.709738377524275 24.198344107488882 28.921178733542945 22.170738781443898 20 25.337682141948388 26.031640963499548 27.494648509856884 21.136028384695184 21 24.14442884519914 25.585372059794338 28.53362942243053 21.736569672575992 22 21.295816851811324 24.097453171124908 28.139318461261976 26.467411515801796 23 21.404003252709554 25.917404665182666 25.849254350143152 26.829337731964632 24 22.911317400750544 23.118081541940914 28.880964709524854 25.08963634778369 25 20.27569738413112 25.092839234652388 27.025781459911425 27.60568192130507 26 18.60521394394592 26.898377737801006 27.394113449811652 27.102294868441422 27 19.572841654611356 25.96064363791008 29.681864364858633 24.784650342619926 28 17.742925623628764 23.967202438464536 32.16018704859313 26.12968488931357 29 19.784943940582888 22.502771386832222 30.516216394154377 27.196068278430513 30 20.863249186377768 23.751897265624304 30.69006197586091 24.69479157213702 31 23.58890591163947 24.756536113439136 27.485929540047653 24.168628434873742 32 23.553496217924422 24.755112608164158 27.310126638588024 24.381264535323393 33 24.99853201018518 22.919502556081657 28.008889790442232 24.07307564329093 34 20.992254351922533 21.86557483812076 30.505006290113933 26.637164519842777 35 20.68299783093384 22.260241675608057 29.48986909089615 27.566891402561954 36 23.341038055634144 21.983369899625085 30.565861140619187 24.10973090412158 37 21.459164082114903 24.469699800531323 31.043625098533255 23.02751101882052 38 22.590850775721407 24.72735425530211 27.923657412102997 24.758137556873482 39 23.992291718936002 22.299032194351177 29.946102531526194 23.76257355518663 40 22.607043148224264 21.518417489185808 32.278871800894315 23.595667561695606 41 19.095433573016035 22.359175292218943 30.598779700103023 27.946611434662 42 22.749927490200054 20.97428259782595 29.493071977764846 26.782717934209145 43 24.587494862035648 20.69491968761177 29.016375648807013 25.70120980154557 44 21.87589525136434 20.93139950141728 29.08683915991836 28.10586608730002 45 22.037107223755456 22.50971097504773 27.337351176971957 28.11583062422486 46 22.710603156978824 21.405960572462646 31.263022849039046 24.620413421519487 47 18.17549328906232 22.22287466213992 33.68582882704945 25.915803221748313 48 20.915918881551907 20.36181945326721 32.56819924803334 26.154062417147543 49 23.28605516438817 18.729058902868896 32.873719067675225 25.111166865067712 50 20.959335792438697 20.284594292099722 31.206616452518094 27.54945346294349 51 19.198281829133105 21.20969478267523 28.937371106045806 30.65465228214586 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 196.0 1 332.5 2 469.0 3 708.5 4 948.0 5 719.5 6 491.0 7 589.0 8 687.0 9 861.5 10 1036.0 11 1271.5 12 1507.0 13 1474.0 14 1441.0 15 1455.0 16 1469.0 17 1423.0 18 1377.0 19 1322.0 20 1267.0 21 1321.0 22 1375.0 23 1507.5 24 1640.0 25 1695.5 26 2104.0 27 2457.0 28 3571.5 29 4686.0 30 5421.0 31 6156.0 32 6906.0 33 7656.0 34 8208.0 35 8760.0 36 10351.0 37 11942.0 38 14200.5 39 16459.0 40 20406.0 41 24353.0 42 29708.5 43 35064.0 44 39597.0 45 44130.0 46 52424.0 47 60718.0 48 68457.5 49 76197.0 50 70189.5 51 64182.0 52 53517.5 53 42853.0 54 36520.0 55 30187.0 56 26783.5 57 23380.0 58 23088.5 59 22797.0 60 21572.5 61 20348.0 62 17612.5 63 14877.0 64 12560.5 65 10244.0 66 8175.5 67 6107.0 68 5206.0 69 4305.0 70 3847.0 71 3389.0 72 2772.0 73 2155.0 74 1792.0 75 1012.0 76 595.0 77 551.5 78 508.0 79 372.0 80 236.0 81 168.0 82 100.0 83 70.5 84 41.0 85 23.0 86 5.0 87 5.5 88 6.0 89 5.0 90 4.0 91 8.0 92 12.0 93 6.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 561993.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.990150502770593 #Duplication Level Percentage of deduplicated Percentage of total 1 66.99778476420413 18.082802941381 2 12.663997569883845 6.836064007557721 3 5.748232294653776 4.654369642727754 4 3.2099293854262134 3.465459088636776 5 2.114593489505619 2.8536598266967754 6 1.4031103875554598 2.2722096319273577 7 1.0008899446068105 1.8909919169153275 8 0.7921679962522181 1.7104586753860465 9 0.5804623905603854 1.4100090554180529 >10 4.09836719899375 24.125205627823785 >50 1.2134363089991642 22.367371834548834 >100 0.16844107718823456 7.114079008393197 >500 0.005284425951003437 0.9042580440210083 >1k 0.003302766219377148 2.313060698566357 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT 3425 0.6094381958494145 TruSeq Adapter, Index 27 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 3315 0.5898649983184844 TruSeq Adapter, Index 20 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 2827 0.5030311765449036 TruSeq Adapter, Index 20 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 2262 0.4024961164996717 TruSeq Adapter, Index 20 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTG 1145 0.20373919248104513 TruSeq Adapter, Index 27 (95% over 21bp) TTCCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT 749 0.13327568136969678 No Hit TTATTGGGGATCACACGGTAGCAGAGATAGGCATTTTATGTGTTCCTTATA 694 0.12348908260423172 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 652 0.11601567991060385 No Hit TGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTG 642 0.11423629831688294 TruSeq Adapter, Index 27 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTG 613 0.10907609169509228 No Hit TGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCTT 592 0.10533939034827836 TruSeq Adapter, Index 20 (95% over 23bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 590 0.10498351402953418 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.7793815937209182E-4 0.0 0.0 0.6268761354678795 0.0 2 1.7793815937209182E-4 0.0 0.0 2.2196006000074733 0.0 3 1.7793815937209182E-4 0.0 0.0 3.0619598464749562 0.0 4 1.7793815937209182E-4 0.0 0.0 4.041331475658949 0.0 5 1.7793815937209182E-4 0.0 0.0 5.727829350187636 0.0 6 1.7793815937209182E-4 0.0 0.0 6.889409654568651 0.0 7 1.7793815937209182E-4 0.0 0.0 7.954547476569993 0.0 8 1.7793815937209182E-4 0.0 0.0 9.727701234712887 0.0 9 1.7793815937209182E-4 0.0 0.0 10.626288939541952 0.0 10 3.5587631874418364E-4 0.0 0.0 12.185027215641476 0.0 11 3.5587631874418364E-4 0.0 0.0 14.755343927771342 0.0 12 3.5587631874418364E-4 0.0 0.0 17.113736292089047 0.0 13 3.5587631874418364E-4 0.0 0.0 17.796485009599763 0.0 14 3.5587631874418364E-4 0.0 0.0 18.03011781285532 0.0 15 3.5587631874418364E-4 0.0 0.0 18.388663203990085 0.0 16 3.5587631874418364E-4 0.0 0.0 19.331913386821544 0.0 17 3.5587631874418364E-4 0.0 0.0 20.715916390417675 0.0 18 3.5587631874418364E-4 0.0 0.0 22.420919833521058 0.0 19 3.5587631874418364E-4 0.0 0.0 23.359543624208843 0.0 20 3.5587631874418364E-4 0.0 0.0 24.41062433161979 0.0 21 5.338144781162755E-4 0.0 0.0 25.702455368661177 0.0 22 5.338144781162755E-4 0.0 0.0 26.91065547079768 0.0 23 5.338144781162755E-4 0.0 0.0 28.08131062130667 0.0 24 5.338144781162755E-4 0.0 0.0 28.95658842725799 0.0 25 5.338144781162755E-4 0.0 0.0 29.679907045105544 0.0 26 5.338144781162755E-4 0.0 0.0 30.3158580267014 0.0 27 5.338144781162755E-4 0.0 0.0 31.01586674567121 0.0 28 5.338144781162755E-4 0.0 0.0 31.670501234001136 0.0 29 5.338144781162755E-4 0.0 0.0 32.368908509536595 0.0 30 5.338144781162755E-4 0.0 0.0 33.18777991896696 0.0 31 7.117526374883673E-4 0.0 0.0 33.925155651404914 0.0 32 7.117526374883673E-4 0.0 0.0 34.64651694949937 0.0 33 7.117526374883673E-4 0.0 0.0 35.27232545601102 0.0 34 7.117526374883673E-4 0.0 0.0 35.92055417060355 0.0 35 7.117526374883673E-4 0.0 0.0 36.623765776442056 0.0 36 7.117526374883673E-4 0.0 0.0 37.30135428733098 0.0 37 7.117526374883673E-4 0.0 0.0 37.95936960068898 0.0 38 7.117526374883673E-4 0.0 0.0 38.61044532583146 0.0 39 7.117526374883673E-4 0.0 0.0 39.39710992841548 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCCT 60 0.0 45.000004 25 ACGCCCA 30 2.1635133E-6 45.000004 1 TTTACGG 135 0.0 45.000004 2 ACGTTCC 30 2.1635133E-6 45.000004 20 TCACACG 180 0.0 45.000004 11 ATCACTC 30 2.1635133E-6 45.000004 36 GTAATTA 30 2.1635133E-6 45.000004 45 CCCCGAC 30 2.1635133E-6 45.000004 9 ATAAGCG 30 2.1635133E-6 45.000004 33 ACTCGTA 30 2.1635133E-6 45.000004 14 CTACCGA 30 2.1635133E-6 45.000004 25 TCGTAAG 30 2.1635133E-6 45.000004 16 TAGTGAT 30 2.1635133E-6 45.000004 16 TACGTTG 30 2.1635133E-6 45.000004 1 TCACGCC 20 7.0302055E-4 45.0 16 AACGTAG 20 7.0302055E-4 45.0 8 GTCGCTC 20 7.0302055E-4 45.0 23 AACCGAC 20 7.0302055E-4 45.0 10 ACACGAT 20 7.0302055E-4 45.0 12 CGAACAA 20 7.0302055E-4 45.0 13 >>END_MODULE