SRR2935311.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935311.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1064184
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	6318	0.5936943235380349	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	4155	0.39043999909790034	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	3057	0.28726235312690285	No Hit
TCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	3014	0.28322169850326634	No Hit
TCCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	1303	0.12244123196740414	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	1084	0.1018620840005112	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATA	65	0.0	45.000004	14
TCGCATA	20	7.0330506E-4	45.0	31
TCGCAAG	20	7.0330506E-4	45.0	12
CGACGAT	20	7.0330506E-4	45.0	15
CTATCGA	20	7.0330506E-4	45.0	42
ATCCGGC	25	3.890611E-5	45.0	12
AATGACG	20	7.0330506E-4	45.0	34
AACATCG	20	7.0330506E-4	45.0	23
AGGTTAC	25	3.890611E-5	45.0	41
AGATTCG	35	1.2118107E-7	45.0	40
ACTCGTC	25	3.890611E-5	45.0	37
CATACGA	50	2.1827873E-11	45.0	18
ACGTCTA	20	7.0330506E-4	45.0	34
CATCGGT	20	7.0330506E-4	45.0	33
GGCATCG	20	7.0330506E-4	45.0	10
GACGCGT	20	7.0330506E-4	45.0	42
TGAATCG	25	3.890611E-5	45.0	28
GTTATCG	25	3.890611E-5	45.0	1
TACGTTG	20	7.0330506E-4	45.0	1
TACGTCA	20	7.0330506E-4	45.0	36