SRR2935310.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935310.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1174071
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	5679	0.4837015819315868	No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	5322	0.4532945622539012	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	3864	0.3291112718055382	No Hit
TCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	3864	0.3291112718055382	No Hit
TCCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTG	1627	0.13857764990362595	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATTG	30	2.1655414E-6	45.000004	12
ATTAGCG	20	7.0333487E-4	45.0	14
ACGCATT	20	7.0333487E-4	45.0	10
CACGCAT	25	3.890857E-5	45.0	36
CGCGATT	20	7.0333487E-4	45.0	13
TAACGGT	20	7.0333487E-4	45.0	24
ACGGGTA	45	3.8562575E-10	45.0	5
ACCTCGC	20	7.0333487E-4	45.0	33
GTTACCG	20	7.0333487E-4	45.0	38
TACGCTT	20	7.0333487E-4	45.0	15
CGTAGTA	35	1.2119563E-7	45.0	21
CGAATCT	20	7.0333487E-4	45.0	27
CGTAAGT	25	3.890857E-5	45.0	30
TTAAACG	20	7.0333487E-4	45.0	31
TTACGCC	20	7.0333487E-4	45.0	14
TTACGAG	20	7.0333487E-4	45.0	25
CGAGACG	20	7.0333487E-4	45.0	14
GACGCGT	20	7.0333487E-4	45.0	32
CCGAAAT	20	7.0333487E-4	45.0	45
GCTACGC	20	7.0333487E-4	45.0	17