SRR2935308.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935308.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1094518
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	9300	0.8496890868857342	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	7180	0.6559965208429647	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	6196	0.5660939335853773	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	5160	0.4714403965946654	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG	2444	0.22329463745685316	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC	2316	0.21159999195993123	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG	2311	0.2111431698702077	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC	1741	0.15906545164172722	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG	1593	0.14554351778591124	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	1514	0.13832572876827975	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG	1455	0.13293522810954228	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	1303	0.11904783658194748	No Hit
TGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG	1135	0.10369861436723746	No Hit
TGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCTT	1131	0.10333315669545863	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTG	20	7.0331374E-4	45.000004	15
CGGCGTA	20	7.0331374E-4	45.000004	24
GGTACGC	20	7.0331374E-4	45.000004	8
CGAACGT	20	7.0331374E-4	45.000004	13
TCCGCTA	40	6.8139343E-9	45.000004	25
CAACCGT	20	7.0331374E-4	45.000004	14
TATGCGA	20	7.0331374E-4	45.000004	10
ACCTCGC	20	7.0331374E-4	45.000004	35
TATTGCG	40	6.8139343E-9	45.000004	1
TACGCAA	20	7.0331374E-4	45.000004	41
GCGATAA	20	7.0331374E-4	45.000004	8
CGTAAAC	35	1.2118653E-7	45.000004	28
ATGCGAA	20	7.0331374E-4	45.000004	11
ACGTAAA	35	1.2118653E-7	45.000004	27
CGCAATA	20	7.0331374E-4	45.000004	27
TGTACGC	20	7.0331374E-4	45.000004	18
TAGTCGA	20	7.0331374E-4	45.000004	42
GTAACAC	20	7.0331374E-4	45.000004	42
TCGAACG	20	7.0331374E-4	45.000004	12
ACGACCG	35	1.2118653E-7	45.000004	21