##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935308.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1094518 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.2781078063586 33.0 31.0 34.0 30.0 34.0 2 32.4314355725534 34.0 31.0 34.0 30.0 34.0 3 32.48198110949295 34.0 31.0 34.0 30.0 34.0 4 35.95383630054508 37.0 35.0 37.0 35.0 37.0 5 31.927273009671836 37.0 35.0 37.0 0.0 37.0 6 33.511339237911116 37.0 35.0 37.0 17.0 37.0 7 35.250180444725444 37.0 35.0 37.0 32.0 37.0 8 35.76664431283908 37.0 35.0 37.0 35.0 37.0 9 37.8109898603769 39.0 38.0 39.0 35.0 39.0 10 37.54528568739847 39.0 37.0 39.0 35.0 39.0 11 37.41322481676866 39.0 37.0 39.0 35.0 39.0 12 37.118281289115394 39.0 37.0 39.0 34.0 39.0 13 36.99720242152253 39.0 37.0 39.0 33.0 39.0 14 38.12900564449374 40.0 37.0 41.0 33.0 41.0 15 38.24317736208998 40.0 37.0 41.0 34.0 41.0 16 38.34456171575068 40.0 37.0 41.0 34.0 41.0 17 38.33339698387783 40.0 37.0 41.0 34.0 41.0 18 38.32828514469383 40.0 37.0 41.0 34.0 41.0 19 38.355259575447825 40.0 37.0 41.0 34.0 41.0 20 38.26807690691245 40.0 37.0 41.0 34.0 41.0 21 38.21152964135811 40.0 37.0 41.0 34.0 41.0 22 38.18940300662027 40.0 37.0 41.0 34.0 41.0 23 38.13890680646641 40.0 37.0 41.0 34.0 41.0 24 38.11094015813354 40.0 36.0 41.0 34.0 41.0 25 38.01990922031433 40.0 36.0 41.0 34.0 41.0 26 37.93791970529493 40.0 36.0 41.0 34.0 41.0 27 37.89611226128762 40.0 36.0 41.0 34.0 41.0 28 37.86356277375064 40.0 36.0 41.0 34.0 41.0 29 37.8097007084397 40.0 36.0 41.0 34.0 41.0 30 37.781155723341236 40.0 36.0 41.0 34.0 41.0 31 37.567545714186515 39.0 36.0 41.0 33.0 41.0 32 37.59109580655595 39.0 35.0 41.0 33.0 41.0 33 37.622399997076336 39.0 35.0 41.0 33.0 41.0 34 37.574112988548386 40.0 35.0 41.0 33.0 41.0 35 37.52058988522802 40.0 35.0 41.0 33.0 41.0 36 37.485664922824476 39.0 35.0 41.0 33.0 41.0 37 37.447719452763685 39.0 35.0 41.0 33.0 41.0 38 37.429527883506715 39.0 35.0 41.0 33.0 41.0 39 37.446429387182306 39.0 35.0 41.0 33.0 41.0 40 37.40772924702929 39.0 35.0 41.0 33.0 41.0 41 37.351481656765806 39.0 35.0 41.0 33.0 41.0 42 37.32844868700195 39.0 35.0 41.0 33.0 41.0 43 37.27276938341809 39.0 35.0 41.0 33.0 41.0 44 37.20220133428596 39.0 35.0 41.0 33.0 41.0 45 37.18695352657517 39.0 35.0 41.0 33.0 41.0 46 37.07611021472466 39.0 35.0 41.0 33.0 41.0 47 37.00153583586565 39.0 35.0 41.0 32.0 41.0 48 36.989529637703534 39.0 35.0 41.0 32.0 41.0 49 36.99739611408857 39.0 35.0 41.0 33.0 41.0 50 36.93171057945141 39.0 35.0 41.0 32.0 41.0 51 36.29557485578127 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 5.0 10 12.0 11 16.0 12 12.0 13 18.0 14 22.0 15 24.0 16 46.0 17 70.0 18 104.0 19 210.0 20 376.0 21 652.0 22 1157.0 23 1746.0 24 2420.0 25 3583.0 26 4889.0 27 6174.0 28 7734.0 29 10063.0 30 13836.0 31 18625.0 32 26073.0 33 40096.0 34 69889.0 35 103473.0 36 89062.0 37 139540.0 38 229634.0 39 324623.0 40 331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.23817424656333 4.400384461470711 55.65134607196958 16.710095219996383 2 19.09379288417367 5.624393568675893 52.74641440341776 22.535399143732675 3 19.71607593479504 5.397992541008919 51.86118455795153 23.024746966244503 4 19.4494745632324 3.986412283763264 51.93966659296604 24.624446560038297 5 16.49538883782633 15.99142270844335 43.93075308035135 23.582435373378967 6 21.037479511529273 7.407735642538542 51.86319457514632 19.69159027078586 7 80.5962990101579 2.2033443031544477 11.323797324484385 5.876559362203271 8 81.44361262217707 3.173177599637466 8.559658223985354 6.8235515542001135 9 76.09550505336595 5.075384781246174 11.373225474592468 7.455884690795401 10 41.130159577092385 24.639704417835066 18.78699116871536 15.443144836357192 11 29.995121140081753 24.5424926771419 24.324040353836118 21.138345828940228 12 25.98678139601176 21.90059916785288 30.905476200482767 21.20714323565259 13 22.763992917430322 26.311764630641065 31.32127566654911 19.6029667853795 14 18.625276148953237 28.345445209672203 30.486113522116586 22.543165119257974 15 16.156975033759153 25.050022018824723 36.86892312415145 21.92407982326467 16 18.730984780515257 24.453138276391982 32.04972417082222 24.766152772270534 17 18.243646975198217 24.89470250831873 29.25022704057859 27.611423475904463 18 19.902276618566347 23.78672621190332 32.13103850279301 24.17995866673732 19 22.038011252441713 24.98442236674043 29.319389904962733 23.658176475855125 20 23.51875437407151 25.858140295545617 30.012389015073303 20.61071631530957 21 23.424374930334633 26.473936472492916 29.472151211766274 20.62953738540618 22 21.861129739300768 24.52577298865802 28.442382857111532 25.17071441492968 23 20.26937884986816 25.510133227594245 27.76930119011291 26.451186732424688 24 21.647885187817835 23.894079402988346 29.55556692534979 24.902468483844032 25 18.9450516117597 27.194344907986896 27.540707416415263 26.319896063838144 26 18.57502571908365 29.143056578329457 27.434907420435295 24.847010282151597 27 20.952419238422756 26.577178264770428 29.47004983015355 23.000352666653267 28 17.62648033198175 25.216487988319976 32.957246934266955 24.199784745431323 29 18.507781507476352 23.862010492289755 33.379441909589424 24.250766090644465 30 21.885158581220228 24.217326713676705 29.865018208928497 24.03249649617457 31 23.743419477797534 26.13844632979997 26.69430744857554 23.423826743826965 32 21.050727352131258 26.33223026026068 27.185939381535984 25.43110300607208 33 22.53804871185307 23.48056404737062 27.617910349578533 26.363476891197767 34 19.944852437328578 23.880192011460753 30.075978649962813 26.098976901247855 35 19.110421208239607 24.88501788001659 28.413968523130727 27.59059238861307 36 22.757871501428024 25.21502615763286 28.77769027096859 23.249412069970525 37 21.685344599175163 23.80481636665637 32.893657299377445 21.616181734791024 38 18.67351656162804 25.11927624762681 30.724757381788148 25.482449808957004 39 20.42259697876143 23.628208946769263 31.373536113613483 24.57565796085583 40 23.135754734047314 22.320692761562626 27.970120180755366 26.573432323634695 41 20.49651079287869 23.21725179485399 26.927652172006304 29.35858524026101 42 20.350967275092778 22.53804871185307 29.447300090085314 27.663683922968836 43 21.836644075291588 21.784840450316942 31.1663216137149 25.212193860676575 44 19.76577817815696 22.556778417531735 30.41384426752233 27.26359913678898 45 21.379365163478354 23.22309911760245 27.644680124036334 27.752855594882863 46 23.654887356809116 23.204460776341733 28.946623079748345 24.194028787100805 47 18.642178566273007 23.241372001191394 32.7098320904727 25.406617342062898 48 18.973557310158444 21.601837521173703 33.18529252145693 26.239312647210916 49 21.042230461262402 19.34413138934216 34.70413460536967 24.90950354402577 50 21.443959806965257 19.659429995669324 31.18806634518573 27.70854385217968 51 19.71178180715164 20.063260722984914 28.591032765107567 31.633924704755884 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 417.0 1 705.5 2 994.0 3 1540.5 4 2087.0 5 1663.0 6 1239.0 7 1267.5 8 1296.0 9 1673.0 10 2050.0 11 2195.5 12 2341.0 13 2499.0 14 2657.0 15 2485.0 16 2313.0 17 2441.5 18 2570.0 19 2459.5 20 2349.0 21 3125.0 22 3901.0 23 3815.0 24 3729.0 25 4426.5 26 6982.0 27 8840.0 28 9838.0 29 10836.0 30 12554.5 31 14273.0 32 16338.0 33 18403.0 34 21565.0 35 24727.0 36 26339.0 37 27951.0 38 31772.5 39 35594.0 40 42885.5 41 50177.0 42 57996.5 43 65816.0 44 76789.5 45 87763.0 46 103501.0 47 119239.0 48 132964.5 49 146690.0 50 138114.5 51 129539.0 52 107076.5 53 84614.0 54 71754.0 55 58894.0 56 52243.0 57 45592.0 58 39858.0 59 34124.0 60 31378.0 61 28632.0 62 25209.0 63 21786.0 64 19334.0 65 16882.0 66 13957.5 67 11033.0 68 9082.5 69 7132.0 70 6104.0 71 5076.0 72 3971.5 73 2867.0 74 2580.5 75 1849.0 76 1404.0 77 1107.0 78 810.0 79 527.0 80 244.0 81 175.5 82 107.0 83 103.0 84 99.0 85 52.5 86 6.0 87 4.5 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1094518.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.776312746967946 #Duplication Level Percentage of deduplicated Percentage of total 1 63.900287882385435 15.832135171952674 2 13.522667519553908 6.700836792754658 3 6.282710918010771 4.669872318102749 4 3.5873572921375105 3.5552594482046014 5 2.340338419601272 2.899247830889291 6 1.6361559874214573 2.432274746830691 7 1.191323052888791 2.066161477873173 8 0.9327818820585289 1.8488716507669984 9 0.6920265466389681 1.5431279533858149 >10 4.437726462459148 23.964241993291964 >50 1.2896393437361435 21.77164671323864 >100 0.17254429106611247 7.006890331963725 >500 0.00851613453759284 1.408827227744892 >1k 0.004443200628309308 1.7469751187045635 >5k 0.0014810668761031027 2.553631224295554 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 9300 0.8496890868857342 No Hit CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT 7180 0.6559965208429647 No Hit TCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 6196 0.5660939335853773 No Hit GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 5160 0.4714403965946654 No Hit TCCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG 2444 0.22329463745685316 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC 2316 0.21159999195993123 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG 2311 0.2111431698702077 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC 1741 0.15906545164172722 No Hit CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG 1593 0.14554351778591124 No Hit TTCCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT 1514 0.13832572876827975 No Hit GCCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG 1455 0.13293522810954228 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC 1303 0.11904783658194748 No Hit TGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG 1135 0.10369861436723746 No Hit TGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCTT 1131 0.10333315669545863 Illumina Single End Adapter 2 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.827288358894052E-4 0.0 0.0 0.6728075737447899 0.0 2 1.827288358894052E-4 0.0 0.0 2.6673841818955926 0.0 3 1.827288358894052E-4 0.0 0.0 3.6753164406615513 0.0 4 1.827288358894052E-4 0.0 0.0 4.754604309842323 0.0 5 1.827288358894052E-4 0.0 0.0 6.636985412757031 0.0 6 1.827288358894052E-4 0.0 0.0 7.758849100700034 0.0 7 1.827288358894052E-4 0.0 0.0 8.779389649142363 0.0 8 1.827288358894052E-4 0.0 0.0 10.279319298540544 0.0 9 1.827288358894052E-4 0.0 0.0 10.91704293579457 0.0 10 1.827288358894052E-4 0.0 0.0 12.399339252529424 0.0 11 1.827288358894052E-4 0.0 0.0 15.075768511801542 0.0 12 1.827288358894052E-4 0.0 0.0 17.528720404780916 0.0 13 1.827288358894052E-4 0.0 0.0 18.26319896063838 0.0 14 1.827288358894052E-4 0.0 0.0 18.52057252598861 0.0 15 1.827288358894052E-4 0.0 0.0 18.981414650101687 0.0 16 1.827288358894052E-4 0.0 0.0 19.9884332646882 0.0 17 1.827288358894052E-4 0.0 0.0 21.40549538701054 0.0 18 1.827288358894052E-4 0.0 0.0 22.959512771831985 0.0 19 1.827288358894052E-4 0.0 0.0 24.02856782620295 0.0 20 1.827288358894052E-4 0.0 0.0 25.07889317489525 0.0 21 1.827288358894052E-4 0.0 0.0 26.39417533562719 0.0 22 1.827288358894052E-4 0.0 0.0 27.66788668619429 0.0 23 1.827288358894052E-4 0.0 0.0 28.95256176691475 0.0 24 1.827288358894052E-4 0.0 0.0 29.9167304694852 0.0 25 1.827288358894052E-4 0.0 0.0 30.7704395907605 0.0 26 2.740932538341078E-4 0.0 0.0 31.533697938270546 0.0 27 2.740932538341078E-4 0.0 0.0 32.285992555627224 0.0 28 2.740932538341078E-4 0.0 0.0 33.076112042013015 0.0 29 2.740932538341078E-4 0.0 0.0 33.90634050787653 0.0 30 2.740932538341078E-4 0.0 0.0 34.833872078851144 0.0 31 2.740932538341078E-4 0.0 0.0 35.6237174719831 0.0 32 2.740932538341078E-4 0.0 0.0 36.373179792383496 0.0 33 2.740932538341078E-4 0.0 0.0 37.141920004970224 0.0 34 2.740932538341078E-4 0.0 0.0 37.875210823394404 0.0 35 2.740932538341078E-4 0.0 0.0 38.66286347049569 0.0 36 2.740932538341078E-4 0.0 0.0 39.37998278694366 0.0 37 2.740932538341078E-4 0.0 0.0 40.10559899426049 0.0 38 2.740932538341078E-4 0.0 0.0 40.82984473530814 0.0 39 2.740932538341078E-4 0.0 0.0 41.55189773032513 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTG 20 7.0331374E-4 45.000004 15 CGGCGTA 20 7.0331374E-4 45.000004 24 GGTACGC 20 7.0331374E-4 45.000004 8 CGAACGT 20 7.0331374E-4 45.000004 13 TCCGCTA 40 6.8139343E-9 45.000004 25 CAACCGT 20 7.0331374E-4 45.000004 14 TATGCGA 20 7.0331374E-4 45.000004 10 ACCTCGC 20 7.0331374E-4 45.000004 35 TATTGCG 40 6.8139343E-9 45.000004 1 TACGCAA 20 7.0331374E-4 45.000004 41 GCGATAA 20 7.0331374E-4 45.000004 8 CGTAAAC 35 1.2118653E-7 45.000004 28 ATGCGAA 20 7.0331374E-4 45.000004 11 ACGTAAA 35 1.2118653E-7 45.000004 27 CGCAATA 20 7.0331374E-4 45.000004 27 TGTACGC 20 7.0331374E-4 45.000004 18 TAGTCGA 20 7.0331374E-4 45.000004 42 GTAACAC 20 7.0331374E-4 45.000004 42 TCGAACG 20 7.0331374E-4 45.000004 12 ACGACCG 35 1.2118653E-7 45.000004 21 >>END_MODULE