##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935306.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 557113 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22924254145927 33.0 31.0 34.0 30.0 34.0 2 32.39694460549296 34.0 31.0 34.0 30.0 34.0 3 32.4333016820645 34.0 31.0 34.0 30.0 34.0 4 35.910459816949164 37.0 35.0 37.0 35.0 37.0 5 31.777073950886084 37.0 35.0 37.0 0.0 37.0 6 33.5184047042521 37.0 35.0 37.0 17.0 37.0 7 35.25374385447836 37.0 35.0 37.0 32.0 37.0 8 35.799392582833285 37.0 35.0 37.0 35.0 37.0 9 37.84977912918923 39.0 38.0 39.0 35.0 39.0 10 37.507446424693015 39.0 37.0 39.0 35.0 39.0 11 37.39110557463208 39.0 37.0 39.0 35.0 39.0 12 37.00378020258009 39.0 35.0 39.0 34.0 39.0 13 36.76877222394739 39.0 35.0 39.0 33.0 39.0 14 37.805448804820564 40.0 36.0 41.0 33.0 41.0 15 37.97074740672 40.0 36.0 41.0 33.0 41.0 16 38.0737803641272 40.0 36.0 41.0 34.0 41.0 17 38.11381174016761 40.0 36.0 41.0 34.0 41.0 18 38.14951544839198 40.0 36.0 41.0 34.0 41.0 19 38.16190611240449 40.0 36.0 41.0 34.0 41.0 20 38.06416292565422 40.0 36.0 41.0 34.0 41.0 21 37.99881352616076 40.0 36.0 41.0 34.0 41.0 22 37.95328416317695 40.0 36.0 41.0 34.0 41.0 23 37.95601969438875 40.0 35.0 41.0 34.0 41.0 24 37.93824053648003 40.0 35.0 41.0 34.0 41.0 25 37.84229231771651 39.0 35.0 41.0 34.0 41.0 26 37.76994613301072 39.0 35.0 41.0 34.0 41.0 27 37.66393173377753 39.0 35.0 41.0 33.0 41.0 28 37.647349819515966 39.0 35.0 41.0 33.0 41.0 29 37.480015723919564 39.0 35.0 41.0 33.0 41.0 30 37.456027771744694 39.0 35.0 41.0 33.0 41.0 31 37.22626289460128 39.0 35.0 41.0 33.0 41.0 32 37.22894816670944 39.0 35.0 41.0 33.0 41.0 33 37.245128008141975 39.0 35.0 41.0 33.0 41.0 34 37.27862031580667 39.0 35.0 41.0 33.0 41.0 35 37.18258055367583 39.0 35.0 41.0 32.0 41.0 36 37.16306566172392 39.0 35.0 41.0 32.0 41.0 37 37.09317858315997 39.0 35.0 41.0 32.0 41.0 38 37.00880431797499 39.0 35.0 41.0 32.0 41.0 39 37.03042829731132 39.0 35.0 41.0 32.0 41.0 40 37.05867032361478 39.0 35.0 41.0 32.0 41.0 41 37.098455789041004 39.0 35.0 41.0 32.0 41.0 42 37.12319044789836 39.0 35.0 41.0 32.0 41.0 43 36.98562589636214 39.0 35.0 41.0 32.0 41.0 44 36.84717463064046 39.0 35.0 41.0 32.0 41.0 45 36.74343266087849 39.0 35.0 40.0 31.0 41.0 46 36.64499482151736 38.0 35.0 40.0 31.0 41.0 47 36.55133877687292 38.0 35.0 40.0 31.0 41.0 48 36.44025718301314 38.0 35.0 40.0 31.0 41.0 49 36.38004857183372 38.0 35.0 40.0 31.0 41.0 50 36.230145410356606 37.0 35.0 40.0 31.0 41.0 51 35.51630459170761 36.0 34.0 39.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 0.0 12 6.0 13 4.0 14 8.0 15 14.0 16 25.0 17 28.0 18 64.0 19 89.0 20 162.0 21 302.0 22 468.0 23 770.0 24 1175.0 25 1784.0 26 2406.0 27 3283.0 28 4271.0 29 5810.0 30 7710.0 31 10707.0 32 15055.0 33 24131.0 34 41152.0 35 64256.0 36 47488.0 37 73800.0 38 119067.0 39 132951.0 40 122.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.31060126042652 4.263407962118996 59.092859078858325 16.333131698596155 2 18.9541439528426 3.818614895003348 55.65064897067561 21.576592181478443 3 20.004559218686335 5.294437573705872 53.23749400929434 21.46350919831345 4 18.958272379212115 3.66873506811006 53.543177057437184 23.82981549524064 5 14.936646604907802 16.51424396845882 46.68675834166498 21.8623510849684 6 19.359088730652488 5.404648608092074 55.074643743728835 20.161618917526607 7 80.64773214769716 1.8244054617285903 11.222139853135719 6.305722537438545 8 82.48829232130645 1.6578324325585654 8.603820050869393 7.250055195265592 9 78.10336502648475 4.138478190241477 11.437177017947885 6.320979765325885 10 38.82426006932167 24.94161866623109 20.067024104625094 16.167097159822156 11 31.791216503653658 25.773945321685186 24.807893551218513 17.626944623442643 12 28.200742039765718 21.69936799177187 30.662899627185148 19.436990341277262 13 22.039873418857574 29.87203673222488 29.41037096603382 18.677718882883724 14 16.497191772584735 33.16993141427322 29.98099128902036 20.351885524121677 15 14.641912861484116 25.400232986844678 40.646332072667484 19.31152207900372 16 14.922286861013834 24.16762847034623 37.49616325592833 23.413921412711606 17 15.211994694074631 23.841662283953166 29.57712349200252 31.369219529969683 18 17.905703151784287 22.454511023795888 35.51039017219128 24.129395652228542 19 21.473022528643202 24.988467330685157 30.51140432910379 23.02710581156785 20 24.543494766770834 26.14263174616281 29.137535832048435 20.176337655017925 21 20.1086673619176 28.506066094311205 30.07774006350597 21.307526480265224 22 18.502171013779968 26.374182616453034 28.122481435543595 27.001164934223397 23 17.100121519332703 27.482216354671312 27.239357186064588 28.178304939931397 24 20.75036841717928 23.9805928061273 31.489661881880338 23.77937689481308 25 18.322135724709348 26.055396302006955 29.171640223796608 26.45082774948709 26 19.320137925340102 28.452037557910153 28.23035901154703 23.997465505202715 27 22.257064545253836 27.997192670068728 29.017452473735133 20.728290310942306 28 19.676080077111823 25.276021202161857 33.287322320606414 21.760576400119906 29 19.480069572959167 22.977385198334986 32.883275026789896 24.659270201915948 30 22.659137374284928 26.13922130698799 28.401239963885246 22.80040135484184 31 24.668963029044377 29.013503544164287 24.55695702667143 21.760576400119906 32 23.24824586753495 27.641609511894355 27.42118744312195 21.68895717744874 33 22.900381071703585 28.15622683369442 25.79207449835132 23.15131759625067 34 20.59025727276154 25.969955825837847 28.905805464959535 24.53398143644108 35 20.375938095144072 23.633804991087985 29.138792309639154 26.851464604128783 36 27.185508146462205 24.948080550983374 26.82346310353555 21.04294819901887 37 22.340710053436197 27.593504369849565 29.91565445430281 20.150131122411434 38 18.776621618953428 28.543042434838174 28.800081850540195 23.880254095668203 39 18.614536009750264 26.68255811657599 31.139463627666203 23.563442246007543 40 22.44194624788867 24.7373513093394 28.249026678609184 24.571675764162745 41 18.25931184517324 25.42087511869226 28.66312579315148 27.65668724298302 42 23.75909375656285 24.428975809216443 27.264666234677705 24.547264199543 43 25.072471832464867 23.45161574043327 28.51001502388205 22.965897403219813 44 21.44879046082213 23.08059585757288 29.438192969828382 26.032420711776606 45 21.1296451527787 24.41802650449729 26.570193120605694 27.882135222118315 46 23.273734412946744 24.272454600772196 29.465655980025595 22.988155006255464 47 19.750212254964435 25.177477459689506 31.735931489661883 23.33637879568418 48 20.48237969675811 22.75678363276391 32.45104673558147 24.30978993489651 49 21.79019337190121 20.760958728301084 32.88614697556869 24.562700924229016 50 21.25726737663634 22.080798688955383 30.00791580882155 26.65401812558673 51 18.26038882596529 22.85640435602831 27.283692895337214 31.599513922669185 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 169.0 1 238.0 2 307.0 3 506.5 4 706.0 5 544.5 6 383.0 7 496.0 8 609.0 9 736.5 10 864.0 11 1013.0 12 1162.0 13 1184.5 14 1207.0 15 1264.5 16 1322.0 17 1202.0 18 1082.0 19 1134.0 20 1186.0 21 1412.0 22 1638.0 23 1914.0 24 2190.0 25 2613.0 26 3594.5 27 4153.0 28 4928.0 29 5703.0 30 6551.5 31 7400.0 32 7641.0 33 7882.0 34 9298.5 35 10715.0 36 12815.0 37 14915.0 38 16738.5 39 18562.0 40 24319.0 41 30076.0 42 36455.0 43 42834.0 44 47962.5 45 53091.0 46 60802.5 47 68514.0 48 77544.5 49 86575.0 50 78702.0 51 70829.0 52 56239.0 53 41649.0 54 34000.5 55 26352.0 56 21570.0 57 16788.0 58 14249.5 59 11711.0 60 9803.0 61 7895.0 62 7038.5 63 6182.0 64 5303.5 65 4425.0 66 3086.0 67 1747.0 68 1397.0 69 1047.0 70 994.5 71 942.0 72 779.0 73 616.0 74 444.0 75 219.0 76 166.0 77 135.0 78 104.0 79 88.5 80 73.0 81 41.0 82 9.0 83 16.5 84 24.0 85 12.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 557113.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.0210828936388 #Duplication Level Percentage of deduplicated Percentage of total 1 63.94635138374415 16.639533101021602 2 13.209568136546595 6.874545349404975 3 6.279773165841472 4.902194943048284 4 3.7681420201795026 3.922045434483775 5 2.4633195061950444 3.2049120532109323 6 1.7028573709934727 2.658611568399899 7 1.248606187793886 2.2743059579866527 8 0.9330319642233138 1.9422801666775582 9 0.6833741374530633 1.6003921570231567 >10 4.5261603965867065 24.464131809398154 >50 1.0514725033502261 18.90389653641183 >100 0.17420846209352858 7.564868491871299 >500 0.00967824789408492 1.6887569648948435 >1k 0.002765213684024263 2.3399393480349513 >5k 6.913034210060657E-4 1.0195861181320807 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC 5668 1.017387854887608 Illumina PCR Primer Index 7 (95% over 23bp) CTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCT 4658 0.8360960882262665 Illumina PCR Primer Index 7 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC 4227 0.7587329679975158 Illumina PCR Primer Index 7 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC 2560 0.45951180460696484 Illumina PCR Primer Index 7 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG 1563 0.280553496328393 Illumina PCR Primer Index 7 (95% over 22bp) TTCCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCT 990 0.17770183068784967 Illumina PCR Primer Index 7 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG 941 0.1689064875527945 Illumina PCR Primer Index 7 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG 786 0.14108448375823218 Illumina PCR Primer Index 7 (95% over 22bp) TTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG 756 0.1356995797979943 Illumina PCR Primer Index 7 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCC 724 0.12995568224040724 No Hit TGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG 719 0.12905819824703427 Illumina PCR Primer Index 7 (95% over 22bp) TGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCTT 715 0.12834021105233587 Illumina PCR Primer Index 7 (96% over 25bp) CGTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTC 585 0.10500562722463845 No Hit TTTCCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTC 563 0.10105669765379734 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8743289063439553 0.0 2 0.0 0.0 0.0 3.3174598331038765 0.0 3 0.0 0.0 0.0 4.534089134520285 0.0 4 0.0 0.0 0.0 5.836697402501827 0.0 5 0.0 0.0 0.0 7.910244420790756 0.0 6 0.0 0.0 0.0 9.254136952467453 0.0 7 0.0 0.0 0.0 10.635364818268465 0.0 8 0.0 0.0 0.0 12.608214132500947 0.0 9 0.0 0.0 0.0 13.52580176732548 0.0 10 0.0 0.0 0.0 15.186685645461512 0.0 11 0.0 0.0 0.0 18.186795138508703 0.0 12 0.0 0.0 0.0 20.761138225099756 0.0 13 0.0 0.0 0.0 21.593823874151205 0.0 14 0.0 0.0 0.0 21.88137774562791 0.0 15 0.0 0.0 0.0 22.259398003636605 0.0 16 1.7949679867459563E-4 0.0 0.0 23.422537259047985 0.0 17 1.7949679867459563E-4 0.0 0.0 25.201889024309253 0.0 18 1.7949679867459563E-4 0.0 0.0 27.412033106389547 0.0 19 1.7949679867459563E-4 0.0 0.0 28.52886218774288 0.0 20 1.7949679867459563E-4 0.0 0.0 29.632767499591644 0.0 21 1.7949679867459563E-4 0.0 0.0 31.191697196080508 0.0 22 1.7949679867459563E-4 0.0 0.0 32.59123373534633 0.0 23 3.5899359734919127E-4 0.0 0.0 34.011591903258406 0.0 24 3.5899359734919127E-4 0.0 0.0 35.06739207306238 0.0 25 3.5899359734919127E-4 0.0 0.0 35.965235060032704 0.0 26 3.5899359734919127E-4 0.0 0.0 36.80294661944704 0.0 27 3.5899359734919127E-4 0.0 0.0 37.52811368609241 0.0 28 3.5899359734919127E-4 0.0 0.0 38.31754060666328 0.0 29 3.5899359734919127E-4 0.0 0.0 39.20515227610915 0.0 30 3.5899359734919127E-4 0.0 0.0 40.188076745651244 0.0 31 3.5899359734919127E-4 0.0 0.0 41.10243343809963 0.0 32 3.5899359734919127E-4 0.0 0.0 41.90819456734989 0.0 33 3.5899359734919127E-4 0.0 0.0 42.683261744026794 0.0 34 3.5899359734919127E-4 0.0 0.0 43.4470206223872 0.0 35 3.5899359734919127E-4 0.0 0.0 44.30322035206502 0.0 36 3.5899359734919127E-4 0.0 0.0 45.05854288088772 0.0 37 3.5899359734919127E-4 0.0 0.0 45.837199993538114 0.0 38 3.5899359734919127E-4 0.0 0.0 46.59988189110647 0.0 39 3.5899359734919127E-4 0.0 0.0 47.354486432734475 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGG 35 1.2104283E-7 45.000004 2 CAACGAT 35 1.2104283E-7 45.000004 26 CGTGATT 35 1.2104283E-7 45.000004 29 TTCACGG 70 0.0 45.000004 2 TGCATGG 205 0.0 45.000004 2 ATGCGTG 35 1.2104283E-7 45.000004 11 TCGAATT 85 0.0 45.000004 18 GCCCCGT 25 3.8882095E-5 45.0 11 CTGCTCG 90 0.0 45.0 1 TTCTACG 45 3.8380676E-10 45.0 1 GAGTGAT 25 3.8882095E-5 45.0 28 CGGCGAG 20 7.030155E-4 45.0 19 CTCACGG 20 7.030155E-4 45.0 2 TCGCAGG 25 3.8882095E-5 45.0 2 TACCCGA 20 7.030155E-4 45.0 40 GCCCACT 20 7.030155E-4 45.0 24 CGAACGA 20 7.030155E-4 45.0 22 CGAACCC 20 7.030155E-4 45.0 36 GATCGTC 45 3.8380676E-10 45.0 20 GTACACG 20 7.030155E-4 45.0 45 >>END_MODULE