SRR2935305.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935305.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1847838
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	14314	0.7746350058825503	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	8847	0.47877573683407315	No Hit
CTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGCT	6726	0.3639929474337036	No Hit
GCTCAACTTGACCCCTGTCTCTTATACACATCTGACGCACGCTGAATCGTA	6707	0.3629647187686367	No Hit
CCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGC	6396	0.34613423904043533	No Hit
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATG	6096	0.3298990495920097	No Hit
TCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGC	5917	0.32021205322111573	No Hit
GCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGC	5141	0.2782170298478546	No Hit
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCACG	4793	0.25938421008768087	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3909	0.2115445185129865	No Hit
GCTCCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTC	2683	0.14519671096708694	No Hit
GCTCAACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTC	2677	0.14487200717811843	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACCTGTCTCTTATACACATC	2582	0.13973086385278363	No Hit
GCCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG	2487	0.13458972052744883	No Hit
TCCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG	2311	0.12506507605103911	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGCTGTCTCTTATACACATCTG	1977	0.10698989846512519	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACATA	20	7.0344E-4	45.000004	39
TAACGAC	20	7.0344E-4	45.000004	19
ACGGATA	20	7.0344E-4	45.000004	40
TTACGAA	20	7.0344E-4	45.000004	31
TAACACG	25	3.89173E-5	45.0	34
CAACGTA	30	2.1662217E-6	44.999996	27
CCGGTAA	30	2.1662217E-6	44.999996	32
ACTTGAC	5650	0.0	43.725666	6
CTCAACT	5860	0.0	43.61775	2
TCAACTT	5800	0.0	43.603447	3
TTGACCC	5265	0.0	43.16239	8
CTTGACC	5910	0.0	43.134518	7
TTACACG	230	0.0	43.04348	34
CGAACGA	110	0.0	42.954544	22
CAACTTG	5790	0.0	42.784973	4
AACTTGA	5755	0.0	42.732407	5
GCTCAAC	6210	0.0	42.644928	1
TGCATTA	4375	0.0	42.48	15
CATTAGA	4285	0.0	42.47958	17
GCATTAG	4410	0.0	42.34694	16