SRR2935304.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935304.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3063219
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGCT	22919	0.7481998512022809	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	22385	0.7307672092658083	No Hit
TCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	18514	0.6043968779248236	No Hit
GCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	12833	0.41893837822238633	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCC	7508	0.24510163981093092	No Hit
TCCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTG	7478	0.24412227790438754	No Hit
TTCCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCT	5567	0.18173692445757225	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTC	4558	0.1487977190008289	No Hit
TGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGCTT	4049	0.13218121198647567	Illumina Single End Adapter 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTG	4032	0.13162624023943442	No Hit
TGCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTG	3781	0.12343224562135453	No Hit
TTCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTG	3709	0.12108177704565033	No Hit
TTTCCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTC	3655	0.11931892561387221	No Hit
GCCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTG	3562	0.11628290370358763	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTC	3434	0.11210429290233574	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3104	0.10133131193035823	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGAAT	20	7.0351287E-4	45.0	27
TCGCGAT	25	3.892333E-5	45.0	11
CCCGATA	30	2.166691E-6	44.999996	30
TACGGGA	915	0.0	43.770493	4
CGCACGG	100	0.0	42.75	2
TTTACGG	1160	0.0	42.478447	2
TGTTACG	245	0.0	42.2449	1
TTACGGG	1905	0.0	42.047245	3
TTTTACG	830	0.0	41.746986	1
TACGGGT	505	0.0	41.435642	4
CGTTTTT	3680	0.0	41.392666	1
TTATGGG	6700	0.0	40.97015	3
GTTACGG	385	0.0	40.909092	2
TTTATGG	4085	0.0	40.758873	2
TTGTACG	205	0.0	40.609756	1
CTACGGG	795	0.0	40.18868	3
TACGGGG	1370	0.0	39.744526	4
TTCTACG	340	0.0	39.705883	1
GCGATGC	465	0.0	39.67742	9
TATGGGA	3485	0.0	39.57676	4