SRR2935303.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935303.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1253326
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT	7873	0.6281685690714147	Illumina Single End Adapter 1 (96% over 25bp)
CCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	7634	0.6090993085597841	Illumina Single End Adapter 1 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	7478	0.5966524272216487	Illumina Single End Adapter 1 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	5849	0.46667826247919536	Illumina Single End Adapter 1 (95% over 24bp)
TCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	2447	0.19524050406677912	Illumina Single End Adapter 1 (95% over 23bp)
GCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	1646	0.1313305556575065	Illumina Single End Adapter 1 (95% over 23bp)
TTCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCT	1612	0.12861777382740006	Illumina Single End Adapter 1 (95% over 22bp)
TGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	1494	0.11920282512291294	Illumina Single End Adapter 1 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1374	0.10962830101665488	No Hit
TGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCTT	1336	0.10659636838300648	Illumina Single End Adapter 1 (96% over 26bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCC	1313	0.10476125126264037	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	1278	0.10196868173164844	Illumina Single End Adapter 1 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAAC	30	2.1656597E-6	45.000004	11
ATTCGTT	30	2.1656597E-6	45.000004	11
ATTCGAT	30	2.1656597E-6	45.000004	14
CACGATA	20	7.03353E-4	45.000004	20
TGACGTA	20	7.03353E-4	45.000004	25
ACGATAC	20	7.03353E-4	45.000004	21
CGCTATC	20	7.03353E-4	45.000004	1
CTACGAA	80	0.0	45.000004	11
TACGAAT	80	0.0	45.000004	12
TACGAAG	20	7.03353E-4	45.000004	37
CGAGGAT	20	7.03353E-4	45.000004	37
GGTATCG	20	7.03353E-4	45.000004	20
AGCGAAT	20	7.03353E-4	45.000004	15
CCCGGTT	20	7.03353E-4	45.000004	3
CAATCGG	20	7.03353E-4	45.000004	20
GTGGTCG	30	2.1656597E-6	45.000004	18
CGTCATT	20	7.03353E-4	45.000004	21
AATCGAC	20	7.03353E-4	45.000004	19
CGGACAA	25	3.891009E-5	45.0	11
GGTCGAC	35	1.2120472E-7	45.0	20