SRR2935302.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935302.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	491497
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	4060	0.8260477683485352	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	3433	0.698478322349882	No Hit
TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	3139	0.6386610701591261	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	2131	0.43357334836224837	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	1017	0.2069188621700641	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	828	0.16846491433314953	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	799	0.16256457313066	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	660	0.13428362736700325	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	653	0.13285940707674715	No Hit
TTTATTGGGAGAGACAGGCAGACAGCTGTGAATTCAAGGCCAGCTTGGTCT	614	0.12492446545960606	No Hit
GCCTTTGGGGATCACATTATGGTCAGTGCGAAATTTGAGGACGACGCTGCA	556	0.11312378305462698	No Hit
TGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCTT	540	0.10986842239118447	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	524	0.10661306172774197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCGT	35	1.2100281E-7	45.000004	32
ACTGAAG	35	1.2100281E-7	45.000004	10
TTCGTAC	35	1.2100281E-7	45.000004	33
CACCTAA	35	1.2100281E-7	45.000004	45
ACGGAAT	35	1.2100281E-7	45.000004	5
AATTCGT	35	1.2100281E-7	45.000004	31
TCGTACA	35	1.2100281E-7	45.000004	34
CCGAATC	35	1.2100281E-7	45.000004	29
TAGGCCC	35	1.2100281E-7	45.000004	29
ATTGCGG	35	1.2100281E-7	45.000004	2
TTTAGTC	25	3.8875365E-5	45.0	22
GCCCCGT	25	3.8875365E-5	45.0	32
CGGGTAG	40	6.8012014E-9	45.0	6
GGAATCG	25	3.8875365E-5	45.0	8
AACCGAA	20	7.029341E-4	45.0	10
TTGGCAC	20	7.029341E-4	45.0	12
TCGCAGT	45	3.8380676E-10	45.0	41
CTCCGTC	25	3.8875365E-5	45.0	29
GTTTCGT	20	7.029341E-4	45.0	21
TACCACC	20	7.029341E-4	45.0	29