##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935302.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 491497 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33861651241005 33.0 31.0 34.0 30.0 34.0 2 32.48967948939668 34.0 31.0 34.0 31.0 34.0 3 32.53864418297569 34.0 31.0 34.0 30.0 34.0 4 35.97838847439557 37.0 35.0 37.0 35.0 37.0 5 31.667654126067912 37.0 35.0 37.0 0.0 37.0 6 33.48342105852121 37.0 35.0 37.0 17.0 37.0 7 35.2614705684877 37.0 35.0 37.0 32.0 37.0 8 35.802326362114115 37.0 35.0 37.0 35.0 37.0 9 37.8650917503057 39.0 38.0 39.0 35.0 39.0 10 37.57243075746139 39.0 37.0 39.0 35.0 39.0 11 37.47787270319046 39.0 37.0 39.0 35.0 39.0 12 37.05803494222752 39.0 35.0 39.0 34.0 39.0 13 36.801750570196766 39.0 35.0 39.0 33.0 39.0 14 37.88055878265788 40.0 36.0 41.0 33.0 41.0 15 38.03952211305461 40.0 36.0 41.0 33.0 41.0 16 38.15968561354393 40.0 36.0 41.0 34.0 41.0 17 38.21142753668893 40.0 36.0 41.0 34.0 41.0 18 38.23288646726226 40.0 36.0 41.0 34.0 41.0 19 38.25051831445563 40.0 36.0 41.0 34.0 41.0 20 38.145270469606125 40.0 36.0 41.0 34.0 41.0 21 38.0722242455193 40.0 36.0 41.0 34.0 41.0 22 38.0307306046629 40.0 36.0 41.0 34.0 41.0 23 37.99048620846109 40.0 35.0 41.0 34.0 41.0 24 37.99738553846717 40.0 35.0 41.0 34.0 41.0 25 37.891665666321465 40.0 35.0 41.0 34.0 41.0 26 37.8055735843759 40.0 35.0 41.0 34.0 41.0 27 37.73279592754381 39.0 35.0 41.0 34.0 41.0 28 37.68648638750592 39.0 35.0 41.0 34.0 41.0 29 37.679662337715186 39.0 36.0 41.0 34.0 41.0 30 37.70238068594519 39.0 36.0 41.0 34.0 41.0 31 37.44570160143399 39.0 35.0 41.0 33.0 41.0 32 37.482599079953694 39.0 35.0 41.0 33.0 41.0 33 37.501897264886665 39.0 35.0 41.0 33.0 41.0 34 37.49173443581548 39.0 35.0 41.0 33.0 41.0 35 37.432438041330876 39.0 35.0 41.0 33.0 41.0 36 37.39444187858725 39.0 35.0 41.0 33.0 41.0 37 37.347385640197196 39.0 35.0 41.0 33.0 41.0 38 37.33900308648883 39.0 35.0 41.0 33.0 41.0 39 37.39596579429783 39.0 35.0 41.0 33.0 41.0 40 37.33028685831246 39.0 35.0 41.0 33.0 41.0 41 37.300506412043205 39.0 35.0 41.0 33.0 41.0 42 37.28605464529794 39.0 35.0 41.0 33.0 41.0 43 37.21915087986295 39.0 35.0 41.0 33.0 41.0 44 37.1601678138422 39.0 35.0 41.0 33.0 41.0 45 37.1578768537753 39.0 35.0 41.0 33.0 41.0 46 37.08044606579491 39.0 35.0 41.0 33.0 41.0 47 37.04245600685253 39.0 35.0 41.0 33.0 41.0 48 37.04146108724977 39.0 35.0 41.0 33.0 41.0 49 37.073542666588 39.0 35.0 41.0 33.0 41.0 50 36.99771717833476 39.0 35.0 41.0 33.0 41.0 51 36.412488784265214 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 4.0 11 1.0 12 3.0 13 3.0 14 2.0 15 12.0 16 22.0 17 22.0 18 45.0 19 89.0 20 161.0 21 263.0 22 422.0 23 671.0 24 1015.0 25 1481.0 26 2094.0 27 2771.0 28 3416.0 29 4332.0 30 5898.0 31 8231.0 32 11791.0 33 19242.0 34 34731.0 35 57228.0 36 37151.0 37 58972.0 38 98092.0 39 143193.0 40 135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.768806320282728 4.568288311017158 56.42862520015382 16.2342801685463 2 18.642433219327888 4.530037823221708 54.62373117231641 22.20379778513399 3 20.22901462267318 4.637057805032381 51.86623723033915 23.26769034195529 4 19.286587710606575 4.783142114804363 51.34985564510058 24.580414529488483 5 15.679037715387887 16.704679784413738 45.952264205071444 21.664018295126926 6 20.46808017139474 5.6010514814942916 55.205830350948226 18.725037996162744 7 81.37994738523328 2.428092134845177 10.633635607134936 5.558324872786609 8 82.53051391971874 2.7098842922744186 8.040333918620053 6.719267869386791 9 77.69894831504567 4.54509386629013 11.240149990742568 6.515807827921635 10 38.97399170289951 26.73749788910207 17.902042128436186 16.386468279562237 11 34.069180483298986 25.581234473455584 23.1181472114784 17.23143783176703 12 32.33936321076222 20.249360626819694 28.889291287637565 18.521984874780518 13 23.501059009515828 29.854098804265337 28.72896477496302 17.915877411255817 14 17.528286032264692 33.53489441441148 28.697021548452987 20.23979800487083 15 14.189710211862941 26.791007880007406 40.32313523785496 18.69614667027469 16 16.013526023556604 22.295151343751844 39.63605067782713 22.055271954864423 17 16.63570683035705 20.79768543856829 29.90577765479749 32.66083007627717 18 19.145386441829757 23.167181081471504 33.57029646162642 24.11713601507232 19 23.308382350248323 24.382447909142886 29.59224573089968 22.716924009709114 20 27.099656762910048 25.530776383172228 27.917769589641445 19.451797264276284 21 23.043273916219224 26.930784928493967 29.456537883242422 20.569403272044386 22 19.67865521050993 26.07136971334515 27.82336413040161 26.426610945743313 23 19.67845175046847 27.738724753152106 26.777172597187775 25.80565089919165 24 22.08945324183057 23.436969096454302 29.704148753705518 24.769428908009612 25 18.452808460682366 26.22335436431962 29.35663900288303 25.967198172114987 26 18.277629364980864 31.855942152241013 26.547262750332152 23.319165732445978 27 20.402769498084425 30.399982095516354 28.448596837824034 20.74865156857519 28 16.307932703556684 26.654893112267214 35.39411227332008 21.64306191085602 29 17.137642752651594 25.349900406309704 33.12695703127384 24.38549980976486 30 20.287204194532215 26.86140505435435 29.963967226656518 22.887423524456914 31 21.311218583226346 28.458973299938762 25.079298551161045 25.15050956567385 32 21.459134033371516 28.006681627761715 25.777980333552392 24.756204005314373 33 21.85913647489201 26.247769569295436 28.247985236939392 23.645108718873157 34 18.162470981511586 25.42904636243965 29.87892092932409 26.529561726724683 35 18.011300170702974 24.856509805756698 27.961716958597915 29.17047306494241 36 23.421506133302948 24.61256121603998 30.033957480920538 21.93197516973654 37 19.66441300760737 25.70697277908105 31.911079823478065 22.717534389833506 38 17.83001727375752 26.43047668653115 28.067923100242727 27.671582939468603 39 19.50225535455964 23.593022948258078 31.506601261045336 25.398120436136946 40 21.859543394974946 22.294337503585986 29.286241828536085 26.559877272902987 41 16.689420281303853 24.216424515307317 27.460391416427772 31.63376378696106 42 21.30531824202386 23.77186432470595 27.834350972640724 27.088466460629462 43 23.09678390712456 22.83350661346865 29.265692364348105 24.804017115058688 44 19.292081131726135 25.05467988614376 29.69885879262742 25.954380189502686 45 19.500424214186456 25.706362398956657 25.62965796332429 29.163555423532593 46 21.446519510800677 24.889673792515516 29.155010101791056 24.508796594892747 47 17.172027499659205 24.829449620241835 31.253903889545615 26.74461899055335 48 18.66847610463543 21.101858200558702 32.57619069902766 27.653474995778204 49 19.510393756218246 19.459732205893424 34.93368219948444 26.096191838403897 50 19.39910111353681 21.59321420069705 30.311476977479007 28.69620770828713 51 17.233675892223147 23.051615777919295 27.119799307015096 32.59490902284246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 123.0 1 231.5 2 340.0 3 571.5 4 803.0 5 640.5 6 478.0 7 579.0 8 680.0 9 752.0 10 824.0 11 889.5 12 955.0 13 978.5 14 1002.0 15 1010.0 16 1018.0 17 1014.0 18 1010.0 19 1121.5 20 1233.0 21 1136.5 22 1040.0 23 1740.0 24 2440.0 25 2281.0 26 2509.0 27 2896.0 28 4426.0 29 5956.0 30 6758.0 31 7560.0 32 8332.0 33 9104.0 34 9309.5 35 9515.0 36 10753.0 37 11991.0 38 14812.5 39 17634.0 40 21542.5 41 25451.0 42 30156.5 43 34862.0 44 40552.0 45 46242.0 46 52283.0 47 58324.0 48 63060.5 49 67797.0 50 63738.5 51 59680.0 52 47205.0 53 34730.0 54 29288.0 55 23846.0 56 19855.0 57 15864.0 58 14886.0 59 13908.0 60 13132.0 61 12356.0 62 10442.5 63 8529.0 64 6515.0 65 4501.0 66 3685.5 67 2870.0 68 2171.5 69 1473.0 70 1099.0 71 725.0 72 723.0 73 721.0 74 526.5 75 255.0 76 178.0 77 185.5 78 193.0 79 125.0 80 57.0 81 46.5 82 36.0 83 54.5 84 73.0 85 49.0 86 25.0 87 12.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 491497.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.92343453578234 #Duplication Level Percentage of deduplicated Percentage of total 1 65.65622994640096 17.02034978881797 2 12.999098676443378 6.739625671259095 3 5.917616338164654 4.602148192508623 4 3.3572728578799156 3.4812817260003555 5 2.2185301838971347 2.8755960993957266 6 1.5038876677329707 2.3391560102187627 7 1.1003569136213542 1.9967521291381074 8 0.8107779637244452 1.6814519572532451 9 0.6345922130552848 1.4805728722850322 >10 4.3846486554402295 24.11143130877581 >50 1.2204030420692442 21.948195368043972 >100 0.1863630934087699 7.859724796189018 >500 0.006290737330253836 1.054703843542858 >1k 0.003931710831408647 2.8090102365714307 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 4060 0.8260477683485352 No Hit CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT 3433 0.698478322349882 No Hit TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 3139 0.6386610701591261 No Hit GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 2131 0.43357334836224837 No Hit TCCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG 1017 0.2069188621700641 No Hit TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA 828 0.16846491433314953 No Hit TTCCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT 799 0.16256457313066 No Hit CGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG 660 0.13428362736700325 No Hit GCCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG 653 0.13285940707674715 No Hit TTTATTGGGAGAGACAGGCAGACAGCTGTGAATTCAAGGCCAGCTTGGTCT 614 0.12492446545960606 No Hit GCCTTTGGGGATCACATTATGGTCAGTGCGAAATTTGAGGACGACGCTGCA 556 0.11312378305462698 No Hit TGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCTT 540 0.10986842239118447 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC 524 0.10661306172774197 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7247246676988873 0.0 2 0.0 0.0 0.0 2.739589458328332 0.0 3 0.0 0.0 0.0 3.7041935149146386 0.0 4 0.0 0.0 0.0 4.827292943802302 0.0 5 0.0 0.0 0.0 6.571352419241623 0.0 6 0.0 0.0 0.0 7.7050317702854745 0.0 7 0.0 0.0 0.0 8.744305662089493 0.0 8 0.0 0.0 0.0 10.352250369788626 0.0 9 0.0 0.0 0.0 11.042793750521366 0.0 10 0.0 0.0 0.0 12.475559362518998 0.0 11 0.0 0.0 0.0 15.068454130950952 0.0 12 0.0 0.0 0.0 17.386677843404943 0.0 13 2.0346004146515646E-4 0.0 0.0 18.15107721918954 0.0 14 2.0346004146515646E-4 0.0 0.0 18.38159744616956 0.0 15 2.0346004146515646E-4 0.0 0.0 18.782617187897383 0.0 16 2.0346004146515646E-4 0.0 0.0 19.761870367469182 0.0 17 2.0346004146515646E-4 0.0 0.0 21.217220044069446 0.0 18 2.0346004146515646E-4 0.0 0.0 23.105736148949028 0.0 19 2.0346004146515646E-4 0.0 0.0 24.03351393803014 0.0 20 2.0346004146515646E-4 0.0 0.0 25.069532469170717 0.0 21 2.0346004146515646E-4 0.0 0.0 26.424372885287195 0.0 22 2.0346004146515646E-4 0.0 0.0 27.685825142371165 0.0 23 2.0346004146515646E-4 0.0 0.0 28.951143140242973 0.0 24 2.0346004146515646E-4 0.0 0.0 29.774749388093927 0.0 25 2.0346004146515646E-4 0.0 0.0 30.563970888937266 0.0 26 2.0346004146515646E-4 0.0 0.0 31.241696287057703 0.0 27 2.0346004146515646E-4 0.0 0.0 31.910469443353673 0.0 28 2.0346004146515646E-4 0.0 0.0 32.58900868163997 0.0 29 2.0346004146515646E-4 0.0 0.0 33.314140269421785 0.0 30 2.0346004146515646E-4 0.0 0.0 34.141408798019114 0.0 31 2.0346004146515646E-4 0.0 0.0 34.92472995765996 0.0 32 2.0346004146515646E-4 0.0 0.0 35.6561688067272 0.0 33 2.0346004146515646E-4 0.0 0.0 36.34772948766727 0.0 34 2.0346004146515646E-4 0.0 0.0 37.033593287446315 0.0 35 2.0346004146515646E-4 0.0 0.0 37.7629975360989 0.0 36 2.0346004146515646E-4 0.0 0.0 38.465341599236616 0.0 37 2.0346004146515646E-4 0.0 0.0 39.16605798204262 0.0 38 2.0346004146515646E-4 0.0 0.0 39.807160572699324 0.0 39 2.0346004146515646E-4 0.0 0.0 40.49058285198078 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGATCGT 35 1.2100281E-7 45.000004 32 ACTGAAG 35 1.2100281E-7 45.000004 10 TTCGTAC 35 1.2100281E-7 45.000004 33 CACCTAA 35 1.2100281E-7 45.000004 45 ACGGAAT 35 1.2100281E-7 45.000004 5 AATTCGT 35 1.2100281E-7 45.000004 31 TCGTACA 35 1.2100281E-7 45.000004 34 CCGAATC 35 1.2100281E-7 45.000004 29 TAGGCCC 35 1.2100281E-7 45.000004 29 ATTGCGG 35 1.2100281E-7 45.000004 2 TTTAGTC 25 3.8875365E-5 45.0 22 GCCCCGT 25 3.8875365E-5 45.0 32 CGGGTAG 40 6.8012014E-9 45.0 6 GGAATCG 25 3.8875365E-5 45.0 8 AACCGAA 20 7.029341E-4 45.0 10 TTGGCAC 20 7.029341E-4 45.0 12 TCGCAGT 45 3.8380676E-10 45.0 41 CTCCGTC 25 3.8875365E-5 45.0 29 GTTTCGT 20 7.029341E-4 45.0 21 TACCACC 20 7.029341E-4 45.0 29 >>END_MODULE