SRR2935299.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935299.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615315
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	4776	0.7761878062455816	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	4364	0.7092302316699576	No Hit
TCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	4323	0.7025669778893737	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	3204	0.5207089051949001	No Hit
TCCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG	1571	0.2553163826657891	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	948	0.15406742887789182	No Hit
TGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG	834	0.13554033300017065	No Hit
GCCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG	810	0.13163989176275567	No Hit
TGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCTT	737	0.11977604966561843	Illumina Single End Adapter 2 (95% over 21bp)
TTTCCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	704	0.11441294296417283	No Hit
TTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG	666	0.10823724433826577	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG	666	0.10823724433826577	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCC	664	0.10791220756848117	No Hit
TTTTTTGGGAGTTACATCATCGGAGAGCGGTTTTTGAGCTTTCAATAAGCT	637	0.10352421117638932	No Hit
TTTTTCGGGATTTGGGGAAAGGGAAAATTGGCTTTCTGTTTAATTGGCAAA	623	0.10124895378789726	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTAAT	35	1.2107012E-7	45.000004	15
TCGGCGT	65	0.0	45.000004	4
CTTTGAC	70	0.0	45.000004	35
GCGTCCC	70	0.0	45.000004	7
TCGCGGT	35	1.2107012E-7	45.000004	13
GTCGGCG	65	0.0	45.000004	3
AGTCGCG	35	1.2107012E-7	45.000004	11
AAACTCC	20	7.0307293E-4	45.0	31
AATCCGA	25	3.888686E-5	45.0	44
GTACCGC	25	3.888686E-5	45.0	26
AGATCGA	50	2.1827873E-11	45.0	32
TGCCCCG	20	7.0307293E-4	45.0	1
ACTGCGG	25	3.888686E-5	45.0	2
TCCGCTA	20	7.0307293E-4	45.0	41
TCCGCGT	25	3.888686E-5	45.0	38
GCGACAG	20	7.0307293E-4	45.0	38
TCCGCAC	25	3.888686E-5	45.0	17
ATAGGTG	20	7.0307293E-4	45.0	36
GTCGAGG	20	7.0307293E-4	45.0	1
GTTTCGC	25	3.888686E-5	45.0	37