SRR2935298.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935298.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1146429
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	8417	0.7341928719528205	No Hit
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	7564	0.6597879153440814	No Hit
TCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	6404	0.5586041525467342	No Hit
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	6155	0.5368845344979933	No Hit
TCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	2550	0.2224298233907202	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	1742	0.15195009895946457	No Hit
TTCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	1654	0.14427408936794167	No Hit
TGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	1573	0.13720867144847174	No Hit
TGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCTT	1522	0.13276007498065734	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCC	1361	0.11871646652343931	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	1193	0.10406226639416832	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	1149	0.10022426159840689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGTCG	20	7.0332806E-4	45.0	15
CGAACGA	25	3.8908E-5	45.0	22
CACGGTA	20	7.0332806E-4	45.0	44
GTACACG	20	7.0332806E-4	45.0	36
CGAAACA	25	3.8908E-5	45.0	44
TCCGATA	25	3.8908E-5	45.0	14
ACGTTAG	20	7.0332806E-4	45.0	13
GTTTACG	80	0.0	45.0	1
CGGCACG	20	7.0332806E-4	45.0	18
TAAACCG	20	7.0332806E-4	45.0	15
CAACCCG	20	7.0332806E-4	45.0	23
ACCTCGT	20	7.0332806E-4	45.0	23
CGCCTCA	20	7.0332806E-4	45.0	18
ATTCCCG	25	3.8908E-5	45.0	1
TCGTGTT	20	7.0332806E-4	45.0	12
ACGGCCC	20	7.0332806E-4	45.0	14
TACGACA	25	3.8908E-5	45.0	23
CGCTAAA	25	3.8908E-5	45.0	19
GTCACGA	25	3.8908E-5	45.0	16
TATTACG	20	7.0332806E-4	45.0	1