##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935297.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 986526 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.29013224182637 33.0 31.0 34.0 30.0 34.0 2 32.434589661093575 34.0 31.0 34.0 30.0 34.0 3 32.49355212128216 34.0 31.0 34.0 30.0 34.0 4 35.96196248248906 37.0 35.0 37.0 35.0 37.0 5 31.72379136484999 37.0 35.0 37.0 0.0 37.0 6 33.48982490071219 37.0 35.0 37.0 17.0 37.0 7 35.30252218390595 37.0 35.0 37.0 32.0 37.0 8 35.842553566758504 37.0 35.0 37.0 35.0 37.0 9 37.88619864048185 39.0 38.0 39.0 35.0 39.0 10 37.49514761901866 39.0 37.0 39.0 35.0 39.0 11 37.39375242010854 39.0 37.0 39.0 35.0 39.0 12 37.18906952274953 39.0 37.0 39.0 34.0 39.0 13 37.11565229907777 39.0 37.0 39.0 33.0 39.0 14 38.2624228859655 40.0 38.0 41.0 34.0 41.0 15 38.372093589018434 40.0 38.0 41.0 34.0 41.0 16 38.45540411504613 40.0 38.0 41.0 34.0 41.0 17 38.46777783859726 40.0 38.0 41.0 34.0 41.0 18 38.45151369553362 40.0 37.0 41.0 34.0 41.0 19 38.49681103184305 40.0 38.0 41.0 34.0 41.0 20 38.429622736755036 40.0 37.0 41.0 34.0 41.0 21 38.35580410450409 40.0 37.0 41.0 34.0 41.0 22 38.3316182239495 40.0 37.0 41.0 34.0 41.0 23 38.29441393333779 40.0 37.0 41.0 34.0 41.0 24 38.27578087146208 40.0 37.0 41.0 34.0 41.0 25 38.208141498551484 40.0 37.0 41.0 34.0 41.0 26 38.16820337223753 40.0 37.0 41.0 34.0 41.0 27 38.133123708853084 40.0 37.0 41.0 34.0 41.0 28 38.126425456602256 40.0 37.0 41.0 34.0 41.0 29 38.06910208144539 40.0 37.0 41.0 34.0 41.0 30 38.022188974238894 40.0 37.0 41.0 34.0 41.0 31 37.83126141632354 40.0 36.0 41.0 34.0 41.0 32 37.83726835379909 40.0 36.0 41.0 34.0 41.0 33 37.86135388220888 40.0 36.0 41.0 34.0 41.0 34 37.87158371903021 40.0 36.0 41.0 34.0 41.0 35 37.801209496759334 40.0 36.0 41.0 33.0 41.0 36 37.816982015679265 40.0 36.0 41.0 33.0 41.0 37 37.78752105874554 40.0 36.0 41.0 33.0 41.0 38 37.751429764648876 40.0 36.0 41.0 33.0 41.0 39 37.74103064693683 40.0 36.0 41.0 33.0 41.0 40 37.68650699525406 40.0 36.0 41.0 33.0 41.0 41 37.65802219100156 40.0 36.0 41.0 33.0 41.0 42 37.668806498764354 40.0 36.0 41.0 33.0 41.0 43 37.648700591773554 40.0 36.0 41.0 33.0 41.0 44 37.60160097148985 40.0 36.0 41.0 33.0 41.0 45 37.582353632849006 40.0 36.0 41.0 33.0 41.0 46 37.46640534562698 39.0 35.0 41.0 33.0 41.0 47 37.42839316956674 39.0 35.0 41.0 33.0 41.0 48 37.42194833182298 39.0 35.0 41.0 33.0 41.0 49 37.43304585991652 39.0 35.0 41.0 33.0 41.0 50 37.371242116274686 39.0 35.0 41.0 33.0 41.0 51 36.73868909689152 39.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 5.0 11 6.0 12 4.0 13 5.0 14 9.0 15 16.0 16 21.0 17 35.0 18 62.0 19 117.0 20 235.0 21 384.0 22 593.0 23 1054.0 24 1679.0 25 2569.0 26 3638.0 27 4904.0 28 6298.0 29 8383.0 30 11362.0 31 15725.0 32 21817.0 33 33301.0 34 55950.0 35 83481.0 36 77612.0 37 125144.0 38 215735.0 39 316029.0 40 347.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.758345953375787 4.053415723457872 57.44197314617151 15.746265176994829 2 18.95459420228154 3.9300535414170534 55.44962829160103 21.665723964700373 3 19.682096569173037 4.038312218836604 54.22148022454552 22.05811098744483 4 19.240952595268652 4.617921879403077 52.449707356927235 23.691418168401036 5 14.865294984622807 16.726979319348906 46.15935109667662 22.248374599351664 6 19.957608821257626 5.822451714399824 55.470712378589106 18.749227085753443 7 83.64432361640748 1.5542418547509138 9.631069024029777 5.170365504811834 8 85.65015012275398 1.612324459770954 6.9963690769427265 5.741156340532333 9 80.6337592724368 4.5869039437379255 9.505476794326759 5.2738599894985025 10 35.916336720978464 32.7211852500593 17.69552956536371 13.666948463598526 11 26.77638501164693 25.231874273967435 28.079442406991806 19.912298307393826 12 23.777275003395754 22.261754885324866 33.55218210163746 20.408788009641913 13 21.63014456790799 27.401710649288514 32.99010872496011 17.978036057843383 14 18.88049580041479 29.547421963536692 32.12687754808287 19.44520468796565 15 16.709037572248477 27.178705883068467 36.23057070974308 19.88168583493998 16 17.387782987980042 25.672815516266173 33.91760582082986 23.021795674923926 17 18.06581884309182 24.53103111321952 30.384703494890147 27.018446548798515 18 18.343662508641433 24.263019930544154 33.88891929862974 23.504398262184676 19 20.504781424919365 25.609461889499112 31.734794622746893 22.150962062834633 20 23.504803725395988 26.842475515090324 29.80458700530954 19.84813375420415 21 22.051319478655405 27.127110689429372 31.378595191611776 19.442974640303447 22 20.791748012723435 25.621929883246867 28.853978506395165 24.732343597634525 23 18.732907191498246 27.123258788921934 27.995714253856463 26.148119765723354 24 19.68270476399 25.672207321449207 30.895283043731236 23.749804870829557 25 17.73080486474761 27.154986285206878 28.690374100631917 26.4238347494136 26 17.288039037997986 28.13225399026483 29.053263674753634 25.526443296983558 27 18.375288639123553 27.363698473228276 31.09558187011797 23.165431017530203 28 15.213081054123256 25.44129602260863 33.63398430451909 25.71163861874902 29 15.716463630963604 25.675349661336856 31.727800382351806 26.880386325347732 30 18.516288470856317 27.51686220130032 30.97779480723265 22.989054520610708 31 21.143487348534148 29.15067621127066 26.399202859326564 23.306633580868624 32 18.947295864477976 29.053466406359284 27.21235932960713 24.78687839955561 33 19.422397382329507 27.294566995700066 27.260508085950093 26.02252753602034 34 18.311326817539527 25.505257844192652 29.00764906348135 27.175766274786472 35 16.66433525320164 25.29320058467795 28.501326878359006 29.541137283761397 36 19.56430950628772 25.205823262640827 29.96089307326923 25.268974157802226 37 17.9799620080971 25.89095472395051 31.281182655094746 24.847900612857643 38 16.633317317536488 29.69075320873449 28.484398789286853 25.191530684442178 39 18.445535140482868 29.276369806776508 28.363874849725196 23.91422020301543 40 22.14214323798866 25.54022904616807 29.533940311760666 22.78368740408261 41 19.450070246501358 23.1973612454208 29.813101732747032 27.539466775330805 42 19.85776350547274 22.496416718870055 28.80187648374194 28.843943291915263 43 19.84793102259849 22.947697273057173 29.341548017994455 27.86282368634988 44 17.978340155251864 25.418184619564006 28.166414265817625 28.437060959366505 45 19.42939162272459 25.307999991890735 26.752259950574036 28.510348434810638 46 21.301111171930593 25.600034869836175 29.17094937183612 23.927904586397116 47 17.522295408331864 25.00663946008519 31.72354301863306 25.747522112949888 48 17.36842211964003 24.068803052327052 31.186506995254053 27.37626783277886 49 19.44550878537413 22.486786967601464 31.84193827633534 26.225765970689064 50 19.896383876349937 23.08200696180334 29.892471156360806 27.12913800548592 51 18.976894678903548 22.431542605060585 27.66759315010451 30.92396956593136 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 122.0 1 277.5 2 433.0 3 794.5 4 1156.0 5 903.0 6 650.0 7 729.0 8 808.0 9 1016.0 10 1224.0 11 1515.0 12 1806.0 13 1594.0 14 1382.0 15 1491.0 16 1600.0 17 1557.5 18 1515.0 19 1716.0 20 1917.0 21 2259.0 22 2601.0 23 2875.5 24 3150.0 25 4439.0 26 7460.0 27 9192.0 28 11046.0 29 12900.0 30 14289.0 31 15678.0 32 18553.5 33 21429.0 34 24635.5 35 27842.0 36 31002.5 37 34163.0 38 38933.0 39 43703.0 40 49951.0 41 56199.0 42 66637.5 43 77076.0 44 83988.0 45 90900.0 46 103216.0 47 115532.0 48 127935.0 49 140338.0 50 128236.0 51 116134.0 52 92278.5 53 68423.0 54 56573.5 55 44724.0 56 36965.5 57 29207.0 58 24749.5 59 20292.0 60 16747.0 61 13202.0 62 11269.5 63 9337.0 64 8168.5 65 7000.0 66 5259.5 67 3519.0 68 3001.0 69 2483.0 70 1880.0 71 1277.0 72 1032.5 73 788.0 74 700.5 75 472.5 76 332.0 77 223.5 78 115.0 79 67.5 80 20.0 81 17.5 82 15.0 83 7.5 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 986526.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.131411878330457 #Duplication Level Percentage of deduplicated Percentage of total 1 64.20939039216378 16.778820267941462 2 13.354012505882013 6.979184020391574 3 6.27431911268182 4.918704509687085 4 3.6285504172727827 3.7927658190017173 5 2.31879296945663 3.029666707272406 6 1.5885878118467738 2.4907225449758266 7 1.187056342902606 2.1713620753420866 8 0.8902651158586782 1.8611107538730163 9 0.6734921595878346 1.5839370917114373 >10 4.659946125342903 26.31709925027337 >50 1.0509803844469066 18.626512964461586 >100 0.15053103345499336 6.7446226858376574 >500 0.010947711523999152 1.9068197655883794 >1k 0.00195494848642842 1.0214047686109966 >5k 0.001172969091857052 1.777266775031338 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 5844 0.5923817517227118 TruSeq Adapter, Index 13 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 5813 0.5892394118350657 TruSeq Adapter, Index 13 (96% over 25bp) CTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGCT 5738 0.5816369766230185 Illumina PCR Primer Index 4 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 4187 0.4244186164378841 TruSeq Adapter, Index 13 (96% over 25bp) TCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 2201 0.2231061320228762 Illumina PCR Primer Index 4 (95% over 21bp) TTCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCT 1353 0.1371479312253301 TruSeq Adapter, Index 13 (95% over 23bp) TGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 1148 0.11636794164573462 RNA PCR Primer, Index 13 (95% over 24bp) GCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 1108 0.11231330953264283 TruSeq Adapter, Index 13 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCC 994 0.1007576080103312 No Hit TTCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 993 0.10065624220750391 RNA PCR Primer, Index 13 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0136580282729498E-4 0.0 0.0 0.6073838905411515 0.0 2 1.0136580282729498E-4 0.0 0.0 2.3300957095910295 0.0 3 1.0136580282729498E-4 0.0 0.0 3.2344814024161552 0.0 4 1.0136580282729498E-4 0.0 0.0 4.247733967477796 0.0 5 1.0136580282729498E-4 0.0 0.0 5.836642926795644 0.0 6 1.0136580282729498E-4 0.0 0.0 6.923284333104246 0.0 7 1.0136580282729498E-4 0.0 0.0 7.894267358386905 0.0 8 1.0136580282729498E-4 0.0 0.0 9.520478933145199 0.0 9 1.0136580282729498E-4 0.0 0.0 10.194865619355191 0.0 10 1.0136580282729498E-4 0.0 0.0 11.540496651887533 0.0 11 1.0136580282729498E-4 0.0 0.0 14.205099510808635 0.0 12 1.0136580282729498E-4 0.0 0.0 16.728094343180008 0.0 13 1.0136580282729498E-4 0.0 0.0 17.44525739818312 0.0 14 1.0136580282729498E-4 0.0 0.0 17.666437579952277 0.0 15 1.0136580282729498E-4 0.0 0.0 17.994153220492922 0.0 16 1.0136580282729498E-4 0.0 0.0 18.95459420228154 0.0 17 1.0136580282729498E-4 0.0 0.0 20.448827501758696 0.0 18 1.0136580282729498E-4 0.0 0.0 22.18745375185246 0.0 19 1.0136580282729498E-4 0.0 0.0 23.219560356239977 0.0 20 1.0136580282729498E-4 0.0 0.0 24.28704362581422 0.0 21 1.0136580282729498E-4 0.0 0.0 25.730594023877728 0.0 22 1.0136580282729498E-4 0.0 0.0 27.24226224144118 0.0 23 1.0136580282729498E-4 0.0 0.0 28.663512162882682 0.0 24 1.0136580282729498E-4 0.0 0.0 29.765054342206895 0.0 25 1.0136580282729498E-4 0.0 0.0 30.70512079762723 0.0 26 1.0136580282729498E-4 0.0 0.0 31.581428163069194 0.0 27 1.0136580282729498E-4 0.0 0.0 32.36366806348743 0.0 28 1.0136580282729498E-4 0.0 0.0 33.2247705585053 0.0 29 1.0136580282729498E-4 0.0 0.0 34.14405702434604 0.0 30 1.0136580282729498E-4 0.0 0.0 35.14879486197019 0.0 31 1.0136580282729498E-4 0.0 0.0 36.094943265560154 0.0 32 1.0136580282729498E-4 0.0 0.0 36.913066660179254 0.0 33 2.0273160565458995E-4 0.0 0.0 37.721864400938244 0.0 34 2.0273160565458995E-4 0.0 0.0 38.547286133360906 0.0 35 3.040974084818849E-4 0.0 0.0 39.47245181576562 0.0 36 3.040974084818849E-4 0.0 0.0 40.264321467452454 0.0 37 3.040974084818849E-4 0.0 0.0 41.042608101560425 0.0 38 3.040974084818849E-4 0.0 0.0 41.83305863200767 0.0 39 3.040974084818849E-4 0.0 0.0 42.594011713832174 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTCGCG 290 0.0 45.000004 1 GTCCCGC 65 0.0 45.000004 10 AACGTAA 20 7.032801E-4 45.0 37 ATGGGCG 170 0.0 45.0 5 GGTACGT 95 0.0 45.0 8 TCGTTAG 35 1.2117016E-7 45.0 1 TCGCACG 20 7.032801E-4 45.0 1 GCGACTT 20 7.032801E-4 45.0 31 ACTGCCG 25 3.8904032E-5 45.0 10 CATGCGT 25 3.8904032E-5 45.0 13 GCGCGAC 160 0.0 45.0 9 CGGTTAC 25 3.8904032E-5 45.0 44 GACCGGA 35 1.2117016E-7 45.0 11 GCGTTTC 20 7.032801E-4 45.0 28 AAGCGCG 20 7.032801E-4 45.0 12 CGCGACA 20 7.032801E-4 45.0 37 CGACACT 20 7.032801E-4 45.0 37 ATCGTAA 20 7.032801E-4 45.0 20 TATTGCG 45 3.8380676E-10 45.0 1 GAGACGA 20 7.032801E-4 45.0 9 >>END_MODULE