SRR2935294.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935294.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	718257
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	4755	0.6620193050676847	No Hit
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	4644	0.6465652266528554	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	4526	0.6301365667163703	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	3849	0.5358806109790785	No Hit
TCCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTG	1860	0.2589602328971385	No Hit
GCCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTG	1166	0.1623374363215395	No Hit
TGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTG	1021	0.14214967623009592	No Hit
TTCCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCT	849	0.11820281598369385	No Hit
TGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCTT	845	0.11764591225703333	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC	763	0.10622938586049283	No Hit
GTTCCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	744	0.1035840931588554	No Hit
CGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTG	726	0.1010780263888831	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGCA	30	2.164359E-6	45.000004	12
AATCCGG	55	1.8189894E-12	45.000004	14
ACGTTGG	30	2.164359E-6	45.000004	2
TATTGCG	60	0.0	45.000004	1
ACGATTA	30	2.164359E-6	45.000004	42
CTTTACG	75	0.0	45.000004	1
CGTTTAA	30	2.164359E-6	45.000004	18
TCGCCGA	20	7.0315175E-4	45.0	19
ACAACGA	20	7.0315175E-4	45.0	13
CCTTATG	25	3.88934E-5	45.0	1
TCGTTGC	20	7.0315175E-4	45.0	2
GTCGCAA	25	3.88934E-5	45.0	32
TCCGCAA	25	3.88934E-5	45.0	34
GGTAACC	25	3.88934E-5	45.0	13
ACGCAAT	20	7.0315175E-4	45.0	27
ACCGCAT	25	3.88934E-5	45.0	13
TAGGTGT	25	3.88934E-5	45.0	19
GACGTCC	25	3.88934E-5	45.0	24
CATTGCG	20	7.0315175E-4	45.0	10
GACGTAT	20	7.0315175E-4	45.0	8