SRR2935292.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935292.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	796960
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	5956	0.7473398915880346	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	5156	0.6469584420799037	TruSeq Adapter, Index 14 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	4270	0.5357859867496486	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	3139	0.39387171250752867	TruSeq Adapter, Index 21 (95% over 21bp)
TCTCTGATGGTAGCTGTGGTAGCACCTGTCTCTTATACACATCTGACGCAG	1941	0.24355049186910258	No Hit
TCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	1522	0.19097570768921904	TruSeq Adapter, Index 14 (95% over 21bp)
TCTCTGATGGTAGCTGTGGTAGCACTGTGTATAACCTGTCTCTTATACACA	1340	0.16813892792611923	No Hit
GCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	1015	0.12735896406344108	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCT	967	0.12133607709295322	No Hit
CGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	928	0.11644248142943184	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC	871	0.10929030315197752	No Hit
TTATGTGGGAGGTGAAAAAAATGAGCGCCCACTGCCTTACCTGTCTCTTAT	815	0.10226360168640834	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCCGA	45	3.8380676E-10	45.000004	24
TCTTACG	45	3.8380676E-10	45.000004	1
ACGGGGT	115	0.0	45.000004	5
AACGGTC	90	0.0	45.000004	44
TTTGACG	45	3.8380676E-10	45.000004	1
AACCGAT	20	7.031984E-4	45.0	38
TCGTTAG	35	1.2113014E-7	45.0	1
AGTCCGA	25	3.8897248E-5	45.0	14
TCGCACC	20	7.031984E-4	45.0	44
GTCGACT	20	7.031984E-4	45.0	18
TACCACG	20	7.031984E-4	45.0	1
CACGGGT	35	1.2113014E-7	45.0	4
AAGAGCG	20	7.031984E-4	45.0	31
GCGGTCA	20	7.031984E-4	45.0	23
TTAGCGT	20	7.031984E-4	45.0	34
CGTTGAT	20	7.031984E-4	45.0	25
ATTACCG	20	7.031984E-4	45.0	15
GATCCGA	20	7.031984E-4	45.0	39
TAAACGA	35	1.2113014E-7	45.0	14
CCTGTCG	20	7.031984E-4	45.0	20