SRR2935290.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935290.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1498628
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	10257	0.6844260216678189	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	9589	0.6398519178875611	No Hit
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	8954	0.5974798282162085	No Hit
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	6778	0.45228035242902176	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	3890	0.25957075404970414	No Hit
TCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	3887	0.2593705709488946	No Hit
TTCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCT	2398	0.16001302524709268	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	2375	0.1584782881408862	No Hit
GCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	2296	0.1532067998195683	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	2291	0.15287316131821904	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTC	1898	0.12664917511216928	No Hit
TGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCTT	1870	0.12478079950461356	Illumina Single End Adapter 2 (95% over 22bp)
TGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1843	0.1229791515973277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	30	2.1659453E-6	45.000004	1
CCCTCGT	25	3.8913746E-5	45.000004	14
GTTACGG	120	0.0	45.000004	2
ATAGCCG	20	7.0339744E-4	45.0	22
TTACGGC	20	7.0339744E-4	45.0	3
CGATATC	20	7.0339744E-4	45.0	10
TATCGAG	20	7.0339744E-4	45.0	5
TACCGCG	35	1.2122655E-7	45.0	1
TACGGGT	190	0.0	42.63158	4
TACGGGA	435	0.0	42.413795	4
CGTATGG	160	0.0	42.1875	2
TTACGGG	930	0.0	41.85484	3
GGGCGTA	205	0.0	41.707317	7
TCTACGG	260	0.0	41.53846	2
CGACGGA	60	3.6379788E-12	41.250004	16
ATCCCGT	55	6.184564E-11	40.909092	11
TATGGGA	1605	0.0	40.79439	4
CGTTTTT	1760	0.0	40.78125	1
CTTTACG	95	0.0	40.263157	1
ACGGGTG	90	0.0	40.0	5