SRR2935288.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935288.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1672606
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	4179	0.24984963583772868	TruSeq Adapter, Index 22 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	4133	0.24709943644827292	TruSeq Adapter, Index 22 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGCT	3717	0.22222806805667325	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	3603	0.21541235652628296	TruSeq Adapter, Index 22 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3422	0.20459091979820712	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACGG	25	3.8915703E-5	45.0	2
CCCGTAG	20	7.034209E-4	45.0	28
CGTACGT	20	7.034209E-4	45.0	11
ATAACGG	20	7.034209E-4	45.0	12
ACGTAAC	20	7.034209E-4	45.0	45
TAAGACG	35	1.2123746E-7	45.0	11
GTAACGC	25	3.8915703E-5	45.0	35
TTACGGG	1015	0.0	43.448273	3
CGTATGG	215	0.0	42.906975	2
TATGGGA	2085	0.0	42.41007	4
TTATGGG	3250	0.0	41.607693	3
TCGTTCA	380	0.0	41.44737	16
CTTTACG	170	0.0	41.02941	1
TAACGGG	105	0.0	40.714287	3
CGAATAT	105	0.0	40.714287	14
TACGGGA	670	0.0	40.634327	4
TACGGGG	875	0.0	40.62857	4
CGTAGAC	50	1.0822987E-9	40.5	16
CTATGGG	1785	0.0	40.084034	3
GCGATAT	45	1.9292202E-8	40.0	9