SRR2935287.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935287.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1280415
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	10178	0.7948985289925532	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	9656	0.7541304967530058	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT	8425	0.6579897923720044	TruSeq Adapter, Index 16 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	6826	0.5331084062589082	TruSeq Adapter, Index 13 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	3750	0.2928737948243343	TruSeq Adapter, Index 16 (95% over 22bp)
TTCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT	2533	0.19782648594401034	No Hit
TGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	2060	0.1608853379568343	TruSeq Adapter, Index 16 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	1905	0.14877988777076182	No Hit
TTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	1748	0.13651823822744968	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCC	1723	0.13456574626195414	No Hit
TGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCTT	1712	0.1337066497971361	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC	1631	0.12738057582893048	No Hit
TTTCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC	1558	0.12167929928968342	No Hit
CGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	1324	0.10340397449264496	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACGG	30	2.165696E-6	45.000004	2
CTATGCG	35	1.2120654E-7	45.0	1
CAGCGGT	20	7.033588E-4	45.0	35
AGTCCGT	20	7.033588E-4	45.0	42
TCCGCCG	25	3.8910555E-5	45.0	15
CCGATAT	25	3.8910555E-5	45.0	25
CCCTACG	20	7.033588E-4	45.0	38
GTTTACG	25	3.8910555E-5	45.0	1
ACACCGC	20	7.033588E-4	45.0	33
CTTCACG	35	1.2120654E-7	45.0	1
TTCGTAA	25	3.8910555E-5	45.0	22
CGTCTAC	20	7.033588E-4	45.0	43
TTCCGCG	110	0.0	45.0	1
TACGGGT	55	1.8189894E-12	45.0	4
CACTGCG	20	7.033588E-4	45.0	1
ACTTACG	20	7.033588E-4	45.0	1
GCGTTAC	20	7.033588E-4	45.0	43
ACGGGTC	25	3.8910555E-5	45.0	5
TTATCCG	25	3.8910555E-5	45.0	1
CCGTCCA	20	7.033588E-4	45.0	19