##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935287.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1280415 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.23784319927523 33.0 31.0 34.0 30.0 34.0 2 32.38691674183761 34.0 31.0 34.0 30.0 34.0 3 32.443544475814484 34.0 31.0 34.0 30.0 34.0 4 35.92886837470664 37.0 35.0 37.0 35.0 37.0 5 31.763176001530752 37.0 35.0 37.0 0.0 37.0 6 33.49651323984802 37.0 35.0 37.0 17.0 37.0 7 35.273198142789646 37.0 35.0 37.0 32.0 37.0 8 35.81130258548986 37.0 35.0 37.0 35.0 37.0 9 37.85815302070032 39.0 38.0 39.0 35.0 39.0 10 37.47289902102053 39.0 37.0 39.0 35.0 39.0 11 37.361551528215465 39.0 37.0 39.0 34.0 39.0 12 37.23376249106735 39.0 37.0 39.0 34.0 39.0 13 37.17677003159132 39.0 37.0 39.0 34.0 39.0 14 38.291195432730795 40.0 38.0 41.0 34.0 41.0 15 38.380864016744574 40.0 38.0 41.0 34.0 41.0 16 38.454070750498865 40.0 38.0 41.0 34.0 41.0 17 38.47195089092208 40.0 38.0 41.0 34.0 41.0 18 38.457315792145515 40.0 38.0 41.0 34.0 41.0 19 38.50077201532316 40.0 38.0 41.0 34.0 41.0 20 38.414445316557526 40.0 38.0 41.0 34.0 41.0 21 38.36558303362582 40.0 37.0 41.0 34.0 41.0 22 38.33480707426889 40.0 37.0 41.0 34.0 41.0 23 38.2826224310087 40.0 37.0 41.0 34.0 41.0 24 38.23512064447855 40.0 37.0 41.0 34.0 41.0 25 38.15091044700351 40.0 37.0 41.0 34.0 41.0 26 38.109492625437845 40.0 37.0 41.0 34.0 41.0 27 38.08449448030521 40.0 37.0 41.0 34.0 41.0 28 38.099578652233845 40.0 37.0 41.0 34.0 41.0 29 38.09208576906706 40.0 37.0 41.0 34.0 41.0 30 38.058310001054345 40.0 37.0 41.0 34.0 41.0 31 37.865984856472316 40.0 37.0 41.0 34.0 41.0 32 37.91811561095426 40.0 37.0 41.0 34.0 41.0 33 37.89194675163912 40.0 37.0 41.0 34.0 41.0 34 37.90211142481149 40.0 37.0 41.0 34.0 41.0 35 37.837397250110314 40.0 36.0 41.0 33.0 41.0 36 37.8210049085648 40.0 36.0 41.0 33.0 41.0 37 37.813989214434386 40.0 36.0 41.0 33.0 41.0 38 37.80857456371567 40.0 36.0 41.0 33.0 41.0 39 37.78232682372512 40.0 36.0 41.0 33.0 41.0 40 37.73886981955069 40.0 36.0 41.0 33.0 41.0 41 37.671533838638254 40.0 36.0 41.0 33.0 41.0 42 37.619095371422546 40.0 36.0 41.0 33.0 41.0 43 37.56145077963004 40.0 36.0 41.0 33.0 41.0 44 37.54407360113713 39.0 36.0 41.0 33.0 41.0 45 37.56161791294229 39.0 36.0 41.0 33.0 41.0 46 37.45446593487268 39.0 35.0 41.0 33.0 41.0 47 37.39617780172835 39.0 35.0 41.0 33.0 41.0 48 37.407151587571214 39.0 35.0 41.0 33.0 41.0 49 37.41847994595502 39.0 35.0 41.0 33.0 41.0 50 37.352453696653036 39.0 35.0 41.0 33.0 41.0 51 36.73426271950891 39.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 14.0 11 21.0 12 13.0 13 15.0 14 22.0 15 31.0 16 35.0 17 45.0 18 88.0 19 169.0 20 271.0 21 507.0 22 829.0 23 1349.0 24 2055.0 25 3234.0 26 4522.0 27 5945.0 28 7778.0 29 10461.0 30 14671.0 31 20391.0 32 28549.0 33 42898.0 34 70146.0 35 105009.0 36 108984.0 37 170138.0 38 284093.0 39 397834.0 40 289.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.928437264480657 4.420363710203333 59.93392767188763 13.717271353428382 2 18.203238793672362 4.180988195233577 54.855183670919196 22.760589340174864 3 18.55367205163951 4.017135069489189 54.79653081227571 22.632662066595596 4 18.26282884845929 4.11796175458738 52.31124283923572 25.307966557717616 5 15.312379189559636 15.979506644330158 46.82247552551321 21.885638640596994 6 19.610673102080185 5.457449342595956 55.09549638203238 19.83638117329147 7 82.08057543843206 1.4683520577312825 10.781270135073393 5.669802368763253 8 83.28268569174838 1.525286723445133 8.138377010578601 7.053650574227888 9 78.6269295501849 4.661223119066865 10.588520128239672 6.123327202508562 10 35.11431840457976 33.55060663925368 16.90694032794055 14.428134628226005 11 23.827821448514737 26.155582369778546 29.083148822842592 20.933447358864118 12 22.663823838364905 22.345645747667746 33.478754934923444 21.511775479043905 13 21.8825146534522 26.483288621267327 32.95205070231136 18.682146022969114 14 18.263922243959964 28.641963738319216 31.574450471136313 21.519663546584507 15 15.038639815997158 27.68336828293951 35.82369778548361 21.454294115579714 16 17.130852106543582 27.58769617663023 32.09568772624501 23.18576399058118 17 17.916925371852095 26.654014518730257 28.713190645220493 26.715869464197155 18 18.322262703888974 25.26212204636778 33.81919143402725 22.596423815715998 19 19.353334661027873 26.316389608056763 31.47448288250294 22.855792848412428 20 20.540371676370555 29.39765622864462 30.426228996067685 19.635743098917146 21 21.32863173268042 28.89469429833296 30.455438275871494 19.321235693115124 22 19.892769141254984 26.680958907854098 28.782933658227993 24.643338292662925 23 18.395051604362646 27.69164684887322 27.464611083125394 26.44869046363874 24 20.183612344435204 26.892843335949674 29.162419996641713 23.761124322973412 25 17.86202129778236 28.111432621454764 27.446101459292493 26.580444621470384 26 17.310637566726413 28.3940753583799 29.8364983228094 24.458788752084285 27 18.312500244061496 27.521233350124763 31.934411889895074 22.231854515918666 28 14.967959606846218 24.70808292623876 32.757348203512144 27.56660926340288 29 15.737944338359048 22.778474166578803 32.757816801583864 28.725764693478283 30 18.438787424389748 24.999550926847935 30.586958134667274 25.974703514095037 31 18.968225145753525 27.33723050729646 25.556557834764508 28.137986512185503 32 17.097737842808776 27.440946880503585 27.519749456230986 27.94156582045665 33 17.727065053127305 26.872615519187136 26.674164235814168 28.726155191871385 34 15.831507753345594 24.24463943330873 29.11228000296779 30.811572810377886 35 14.519511252211197 24.049312137080555 31.638179808890087 29.792996801818163 36 17.49620240312711 25.04672313273431 32.303979569124074 25.153094895014505 37 15.419844347340511 25.614273497264563 31.903796815876102 27.062085339518827 38 15.406489302296523 26.85410589535424 27.135030439349745 30.604374362999497 39 16.860002421090037 25.47814575743021 28.1387675089717 29.523084312508054 40 19.39316549712398 23.049245752353727 28.741540828559494 28.816047921962802 41 16.337203172408945 24.290093446265466 30.267374249754965 29.105329131570624 42 17.970345552028054 25.03422718415514 31.048683434667666 25.946743829149142 43 19.531480027959685 24.81281459526794 29.97778064143266 25.67792473533971 44 17.867644474642987 23.434355267628074 28.19671747050761 30.501282787221328 45 18.837954881815662 21.69359153087085 27.322860166430413 32.145593420883074 46 20.244451994080045 21.797073605042115 30.99104587184624 26.9674285290316 47 14.582928191250494 24.0026085292659 33.58770398659809 27.826759292885512 48 15.524107418297975 22.810573134491552 32.349199283044946 29.316120164165525 49 18.542972395668592 20.280846444316882 33.353951648488966 27.82222951152556 50 18.659965714241086 19.861138771413955 30.279323500583793 31.199572013761163 51 16.30807199228375 19.984380064276035 27.711015569170932 35.99653237426928 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 224.0 1 370.5 2 517.0 3 1011.0 4 1505.0 5 1131.5 6 758.0 7 959.0 8 1160.0 9 1779.5 10 2399.0 11 3003.0 12 3607.0 13 4011.5 14 4416.0 15 4249.0 16 4082.0 17 3845.0 18 3608.0 19 3426.0 20 3244.0 21 2980.5 22 2717.0 23 3778.0 24 4839.0 25 5471.5 26 7710.0 27 9316.0 28 10274.0 29 11232.0 30 14319.0 31 17406.0 32 20367.0 33 23328.0 34 25857.5 35 28387.0 36 33099.0 37 37811.0 38 44671.5 39 51532.0 40 60045.0 41 68558.0 42 77460.0 43 86362.0 44 101711.0 45 117060.0 46 140203.5 47 163347.0 48 182755.0 49 202163.0 50 184264.5 51 166366.0 52 130893.5 53 95421.0 54 75892.5 55 56364.0 56 46071.5 57 35779.0 58 30441.5 59 25104.0 60 21657.5 61 18211.0 62 15107.5 63 12004.0 64 9657.5 65 7311.0 66 5317.5 67 3324.0 68 2677.0 69 2030.0 70 1686.5 71 1343.0 72 955.0 73 567.0 74 466.0 75 297.5 76 230.0 77 200.5 78 171.0 79 127.0 80 83.0 81 69.0 82 55.0 83 30.0 84 5.0 85 2.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1280415.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.395331598748164 #Duplication Level Percentage of deduplicated Percentage of total 1 65.95876341312494 18.72920958959061 2 13.266397089734014 7.534074889673299 3 6.230689595971217 5.307674914994188 4 3.4125498768023745 3.8760194139628252 5 2.200808102749876 3.1246337931397274 6 1.4443048132404095 2.460690846097768 7 1.0661939576244441 2.1192451682729416 8 0.7678176506652957 1.7441949438410282 9 0.5970294298466801 1.5257563771237233 >10 4.151812289226713 24.700036276380224 >50 0.7367161302205303 14.102446477179578 >100 0.15069336517335225 7.828361821372256 >500 0.010449539891076004 2.0144039053802327 >1k 0.004674794161797159 2.193684135117151 >5k 8.249636756112634E-4 1.9448313075162982 >10k+ 2.7498789187042113E-4 0.7947361403581676 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 10178 0.7948985289925532 TruSeq Adapter, Index 13 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 9656 0.7541304967530058 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT 8425 0.6579897923720044 TruSeq Adapter, Index 16 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 6826 0.5331084062589082 TruSeq Adapter, Index 13 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG 3750 0.2928737948243343 TruSeq Adapter, Index 16 (95% over 22bp) TTCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT 2533 0.19782648594401034 No Hit TGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG 2060 0.1608853379568343 TruSeq Adapter, Index 16 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG 1905 0.14877988777076182 No Hit TTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG 1748 0.13651823822744968 TruSeq Adapter, Index 16 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCC 1723 0.13456574626195414 No Hit TGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCTT 1712 0.1337066497971361 TruSeq Adapter, Index 13 (95% over 23bp) CGTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC 1631 0.12738057582893048 No Hit TTTCCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC 1558 0.12167929928968342 No Hit CGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG 1324 0.10340397449264496 TruSeq Adapter, Index 16 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5619935723964497E-4 0.0 0.0 0.67751471202696 0.0 2 1.5619935723964497E-4 0.0 0.0 2.8836744336797056 0.0 3 1.5619935723964497E-4 0.0 0.0 4.071726744844445 0.0 4 1.5619935723964497E-4 0.0 0.0 5.427849564399042 0.0 5 1.5619935723964497E-4 0.0 0.0 7.658142086745313 0.0 6 1.5619935723964497E-4 0.0 0.0 9.047457269713336 0.0 7 1.5619935723964497E-4 0.0 0.0 10.348676015198198 0.0 8 1.5619935723964497E-4 0.0 0.0 12.47728275598146 0.0 9 1.5619935723964497E-4 0.0 0.0 13.369181085819832 0.0 10 1.5619935723964497E-4 0.0 0.0 15.106117938324683 0.0 11 1.5619935723964497E-4 0.0 0.0 18.76821186880816 0.0 12 1.5619935723964497E-4 0.0 0.0 21.93046785612477 0.0 13 1.5619935723964497E-4 0.0 0.0 22.814478118422542 0.0 14 1.5619935723964497E-4 0.0 0.0 23.066974379400428 0.0 15 1.5619935723964497E-4 0.0 0.0 23.433886669556355 0.0 16 1.5619935723964497E-4 0.0 0.0 24.40365037897869 0.0 17 1.5619935723964497E-4 0.0 0.0 25.97142332759301 0.0 18 1.5619935723964497E-4 0.0 0.0 27.715154852137783 0.0 19 1.5619935723964497E-4 0.0 0.0 28.88235454911103 0.0 20 1.5619935723964497E-4 0.0 0.0 30.04463396633123 0.0 21 1.5619935723964497E-4 0.0 0.0 31.662312609583612 0.0 22 1.5619935723964497E-4 0.0 0.0 33.38183323375624 0.0 23 1.5619935723964497E-4 0.0 0.0 34.954448362444985 0.0 24 1.5619935723964497E-4 0.0 0.0 36.20052873482425 0.0 25 1.5619935723964497E-4 0.0 0.0 37.217074151739865 0.0 26 1.5619935723964497E-4 0.0 0.0 38.161611664968 0.0 27 1.5619935723964497E-4 0.0 0.0 39.07077002378135 0.0 28 1.5619935723964497E-4 0.0 0.0 39.978834987094025 0.0 29 1.5619935723964497E-4 0.0 0.0 40.96140704381001 0.0 30 1.5619935723964497E-4 0.0 0.0 42.04558678241039 0.0 31 3.9049839309911237E-4 0.0 0.0 42.98918709949508 0.0 32 3.9049839309911237E-4 0.0 0.0 43.87757094379557 0.0 33 3.9049839309911237E-4 0.0 0.0 44.71230030888423 0.0 34 3.9049839309911237E-4 0.0 0.0 45.59638867086062 0.0 35 3.9049839309911237E-4 0.0 0.0 46.591847174548874 0.0 36 3.9049839309911237E-4 0.0 0.0 47.47484214102459 0.0 37 3.9049839309911237E-4 0.0 0.0 48.299262348535436 0.0 38 3.9049839309911237E-4 0.0 0.0 49.153672832636296 0.0 39 4.6859807171893486E-4 0.0 0.0 50.015737085241895 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAACGG 30 2.165696E-6 45.000004 2 CTATGCG 35 1.2120654E-7 45.0 1 CAGCGGT 20 7.033588E-4 45.0 35 AGTCCGT 20 7.033588E-4 45.0 42 TCCGCCG 25 3.8910555E-5 45.0 15 CCGATAT 25 3.8910555E-5 45.0 25 CCCTACG 20 7.033588E-4 45.0 38 GTTTACG 25 3.8910555E-5 45.0 1 ACACCGC 20 7.033588E-4 45.0 33 CTTCACG 35 1.2120654E-7 45.0 1 TTCGTAA 25 3.8910555E-5 45.0 22 CGTCTAC 20 7.033588E-4 45.0 43 TTCCGCG 110 0.0 45.0 1 TACGGGT 55 1.8189894E-12 45.0 4 CACTGCG 20 7.033588E-4 45.0 1 ACTTACG 20 7.033588E-4 45.0 1 GCGTTAC 20 7.033588E-4 45.0 43 ACGGGTC 25 3.8910555E-5 45.0 5 TTATCCG 25 3.8910555E-5 45.0 1 CCGTCCA 20 7.033588E-4 45.0 19 >>END_MODULE