SRR2935280.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935280.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1259475
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	7806	0.6197820520454952	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	7531	0.5979475575140436	No Hit
TCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	6461	0.5129915242462136	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	5367	0.42612993509200264	No Hit
TCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	2513	0.19952758093650133	No Hit
TTCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	1545	0.1226701601857917	No Hit
GCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	1488	0.11814446495563627	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1398	0.11099863038170667	No Hit
CGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	1389	0.1102840469243137	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCC	1318	0.10464677742710257	No Hit
TGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCTT	1272	0.1009944619782052	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	20	7.0335437E-4	45.0	1
AAATCGG	20	7.0335437E-4	45.0	10
CGAAAAT	25	3.89102E-5	45.0	22
ACGTTGA	20	7.0335437E-4	45.0	28
GCGGTAT	25	3.89102E-5	45.0	30
GCACGAC	95	0.0	45.0	16
TCGATTA	20	7.0335437E-4	45.0	45
TACGGCA	25	3.89102E-5	45.0	42
CGTTAGC	20	7.0335437E-4	45.0	25
CGTTAAC	20	7.0335437E-4	45.0	28
TATTCGA	20	7.0335437E-4	45.0	17
AACGCAC	20	7.0335437E-4	45.0	42
TCCGTTA	20	7.0335437E-4	45.0	23
CGCGTTG	25	3.89102E-5	45.0	14
TGTACGG	95	0.0	45.0	2
CCGTTAG	20	7.0335437E-4	45.0	24
AATCGAA	20	7.0335437E-4	45.0	34
GACTACG	20	7.0335437E-4	45.0	42
CCCGATA	20	7.0335437E-4	45.0	23
TAATCGG	20	7.0335437E-4	45.0	44