SRR2935279.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935279.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2121121
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	9179	0.4327428751117923	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	9069	0.4275569380530389	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	8043	0.3791862887595757	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	6561	0.3093175731134622	No Hit
TCCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG	3312	0.15614385035082864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	25	3.891925E-5	45.0	30
TAGCGAT	25	3.891925E-5	45.0	24
CACGCGT	25	3.891925E-5	45.0	16
CGCGACA	20	7.0346385E-4	45.0	29
CCGTCGT	25	3.891925E-5	45.0	34
CGGATCG	25	3.891925E-5	45.0	12
AACGCAC	25	3.891925E-5	45.0	23
TATCGGC	20	7.0346385E-4	45.0	24
ACGCGTG	25	3.891925E-5	45.0	17
TACGGGA	905	0.0	42.26519	4
GCGATAG	80	0.0	42.1875	9
TGCGACG	70	0.0	41.785713	1
CGAACGA	60	3.6379788E-12	41.249996	22
TCTACGG	475	0.0	41.210526	2
TTACGGG	1305	0.0	41.206894	3
CGTATGG	270	0.0	40.833332	2
TTCGTAC	45	1.929584E-8	40.0	33
TCTTGCG	790	0.0	39.873417	1
TTATGGG	4625	0.0	39.794594	3
GCACGGG	345	0.0	39.782608	3