##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935278.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 727352 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14085064727945 33.0 31.0 34.0 30.0 34.0 2 32.291204258735796 34.0 31.0 34.0 30.0 34.0 3 32.35717644276774 34.0 31.0 34.0 30.0 34.0 4 35.86603460222836 37.0 35.0 37.0 35.0 37.0 5 31.57764328688173 37.0 35.0 37.0 0.0 37.0 6 33.36640993631694 37.0 35.0 37.0 17.0 37.0 7 35.16782520705243 37.0 35.0 37.0 32.0 37.0 8 35.71523278962593 37.0 35.0 37.0 35.0 37.0 9 37.73603977166489 39.0 37.0 39.0 35.0 39.0 10 37.4280155963 39.0 37.0 39.0 35.0 39.0 11 37.33570540811051 39.0 37.0 39.0 34.0 39.0 12 37.078410453260595 39.0 37.0 39.0 34.0 39.0 13 36.90356388653637 39.0 37.0 39.0 33.0 39.0 14 37.943419417283515 40.0 37.0 41.0 33.0 41.0 15 38.07988566746225 40.0 37.0 41.0 33.0 41.0 16 38.18222676228291 40.0 37.0 41.0 34.0 41.0 17 38.216569143963305 40.0 37.0 41.0 34.0 41.0 18 38.217659400125385 40.0 37.0 41.0 34.0 41.0 19 38.263923107381295 40.0 37.0 41.0 34.0 41.0 20 38.16435646014585 40.0 37.0 41.0 34.0 41.0 21 38.10714757091477 40.0 37.0 41.0 34.0 41.0 22 38.07004449015057 40.0 36.0 41.0 34.0 41.0 23 38.02750525192754 40.0 36.0 41.0 34.0 41.0 24 38.001634696818044 40.0 36.0 41.0 34.0 41.0 25 37.89995215521508 40.0 36.0 41.0 34.0 41.0 26 37.88252867937395 40.0 36.0 41.0 34.0 41.0 27 37.80878721719333 40.0 36.0 41.0 34.0 41.0 28 37.81939418603372 40.0 36.0 41.0 34.0 41.0 29 37.82561950747368 40.0 36.0 41.0 34.0 41.0 30 37.729279633519944 40.0 36.0 41.0 33.0 41.0 31 37.43307092026969 39.0 36.0 41.0 33.0 41.0 32 37.52980812591427 39.0 35.0 41.0 33.0 41.0 33 37.53468609421573 39.0 35.0 41.0 33.0 41.0 34 37.48838664085615 39.0 35.0 41.0 33.0 41.0 35 37.5154134449345 39.0 35.0 41.0 33.0 41.0 36 37.51837762183922 39.0 35.0 41.0 33.0 41.0 37 37.43214702097471 39.0 35.0 41.0 33.0 41.0 38 37.457250409705345 39.0 35.0 41.0 33.0 41.0 39 37.44661731871226 39.0 35.0 41.0 33.0 41.0 40 37.30792518615471 39.0 35.0 41.0 33.0 41.0 41 37.26870896072328 39.0 35.0 41.0 33.0 41.0 42 37.36502683707476 39.0 35.0 41.0 33.0 41.0 43 37.352963901934686 39.0 35.0 41.0 33.0 41.0 44 37.30957500632431 39.0 35.0 41.0 33.0 41.0 45 37.30317232921612 39.0 35.0 41.0 33.0 41.0 46 37.15988682233637 39.0 35.0 41.0 33.0 41.0 47 37.08986982918862 39.0 35.0 41.0 32.0 41.0 48 37.147855508749544 39.0 35.0 41.0 33.0 41.0 49 37.18505070447321 39.0 35.0 41.0 33.0 41.0 50 37.09599891111869 39.0 35.0 41.0 32.0 41.0 51 36.439473597377884 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 4.0 12 6.0 13 3.0 14 10.0 15 9.0 16 14.0 17 45.0 18 67.0 19 110.0 20 180.0 21 377.0 22 587.0 23 907.0 24 1370.0 25 2171.0 26 2926.0 27 3981.0 28 5313.0 29 7296.0 30 9525.0 31 13309.0 32 18739.0 33 28735.0 34 47339.0 35 67063.0 36 62043.0 37 95804.0 38 157298.0 39 201939.0 40 177.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.748407923536334 4.433754220789933 56.85239058942575 15.965447266247978 2 18.62550731970215 4.792315137649996 54.103515216841366 22.478662325806486 3 19.663656661423907 4.747495023042489 52.350718771653895 23.23812954387972 4 19.27388664635555 4.174045029091829 51.90512984084735 24.646938483705277 5 15.425131160703485 16.495864450774867 45.226107854243885 22.852896534277765 6 20.21744629835348 5.794993345725316 54.14819784643474 19.839362509486467 7 78.66493802175563 1.919015827274827 12.672268722709223 6.743777428260319 8 78.72213178763515 2.5124011482748383 10.102811293569001 8.662655770521013 9 73.41369790692815 4.960871764977617 13.337558706101035 8.287871621993203 10 36.585862141026624 25.644117291215256 20.581781585807146 17.188238981950967 11 27.389077090597127 25.42565360375719 27.203059866474554 19.982209439171132 12 24.59345681320736 20.65464864329788 33.579339851956135 21.172554691538622 13 21.41659059162551 27.648236342238697 32.79787503162155 18.137298034514238 14 16.64544814615207 30.0844707926836 31.27605341017829 21.99402765098604 15 14.105824965078806 26.21646740505285 38.57911987593352 21.098587753934822 16 14.953007622169185 26.255100694024353 34.02492878276268 24.766962901043787 17 15.60619892431725 25.591872985844542 29.2150155633036 29.586912526534608 18 17.438874162716264 24.275316490502536 34.049263630264306 24.2365457165169 19 19.681942168303653 25.103113760600092 31.391128367007997 23.823815704088254 20 21.71644540745059 26.766407461586688 30.736149759676195 20.78099737128653 21 19.804303830882432 29.003151156523938 30.53377181887174 20.658773193721885 22 17.48768134273364 26.610911910601743 28.425164157106874 27.476242589557735 23 16.97362487488864 27.197972920951617 28.369070271340423 27.459331932819325 24 20.08353589458749 24.48539359209846 29.860232734631925 25.570837778682126 25 16.12053036219052 27.208559267039895 28.331399377467857 28.33951099330173 26 16.28661225926374 27.16951352302599 29.221202388939606 27.322671828770662 27 17.834831003420625 26.58066520749238 31.620453370582606 23.96405041850438 28 13.812431944918005 23.873310309176297 35.76631397177707 26.54794377412862 29 15.783417107535277 21.81625952771148 32.4142918421892 29.986031522564037 30 20.00998141202609 24.577508551567878 31.325548015266335 24.086962021139698 31 19.542394878958195 27.83961548191247 28.023020490766505 24.59496914836283 32 19.325718496683862 26.0506604780079 27.127168138672886 27.49645288663536 33 20.237656595431098 24.376230490876495 27.60314125760292 27.782971656089483 34 16.78375807037033 23.40187419571267 31.301488137792983 28.512879596124023 35 15.469401335254457 21.676987208394287 29.962246615118953 32.89136484123231 36 19.730886833335166 22.65285583871358 30.926841474279303 26.68941585367195 37 16.18611071393218 24.652162914242346 35.87217743265984 23.28954893916563 38 17.029718760655086 25.78091488027805 30.80118017136132 26.388186187705543 39 20.72806564084515 23.308384386101917 29.09430372089442 26.86924625215851 40 22.463813944280073 23.591328545188574 29.752306998537158 24.19255051199419 41 16.475654153697246 24.315737084657773 28.90333703626305 30.30527172538193 42 17.798259989661126 20.123406548686194 31.307674963428987 30.770658498223696 43 20.00970644199782 19.91539172230227 31.235357845994788 28.839543989705124 44 17.86961471199639 21.249821269481625 30.215631496166917 30.664932522355066 45 19.31444472552492 21.354997305293725 26.981296538677285 32.34926143050407 46 21.631204698687842 21.989490645519638 31.70968114475522 24.669623511037297 47 15.473663370692595 22.947486224001583 35.57878441249904 26.000065992806785 48 16.359616801768606 20.135367744915804 34.58243051507386 28.92258493824173 49 19.697203004872467 17.67837305733675 35.41366491052475 27.21075902726603 50 19.835787899118994 18.859506813757303 31.729616471804572 29.575088815319127 51 17.075776240389796 19.51476039111737 28.736430229105025 34.673033139387805 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 270.0 1 322.5 2 375.0 3 693.0 4 1011.0 5 735.5 6 460.0 7 601.5 8 743.0 9 1070.0 10 1397.0 11 1679.0 12 1961.0 13 1881.0 14 1801.0 15 1782.0 16 1763.0 17 1639.0 18 1515.0 19 1619.0 20 1723.0 21 1904.0 22 2085.0 23 2322.5 24 2560.0 25 2905.5 26 4045.5 27 4840.0 28 5736.5 29 6633.0 30 7852.5 31 9072.0 32 10950.5 33 12829.0 34 14169.5 35 15510.0 36 17275.5 37 19041.0 38 21945.0 39 24849.0 40 30102.0 41 35355.0 42 41947.5 43 48540.0 44 57103.5 45 65667.0 46 81138.0 47 96609.0 48 107499.0 49 118389.0 50 106715.0 51 95041.0 52 74467.0 53 53893.0 54 42819.0 55 31745.0 56 26275.0 57 20805.0 58 17637.5 59 14470.0 60 12939.0 61 11408.0 62 9955.0 63 8502.0 64 6865.0 65 5228.0 66 4076.5 67 2925.0 68 2410.5 69 1896.0 70 1621.0 71 1346.0 72 1093.5 73 841.0 74 680.5 75 364.5 76 209.0 77 189.0 78 169.0 79 117.5 80 66.0 81 45.0 82 24.0 83 17.5 84 11.0 85 7.0 86 3.0 87 2.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 727352.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.94223169023508 #Duplication Level Percentage of deduplicated Percentage of total 1 63.81196618506678 17.830487437525825 2 13.716868689253156 7.665598459592858 3 6.3844003308326 5.35183179742014 4 3.695163858461971 4.130044986661097 5 2.447601546405321 3.419572474751758 6 1.6396332225566774 2.7489006835011276 7 1.2279938081838966 2.401902125171398 8 0.8672102988645491 1.9385432876024997 9 0.6853152255342675 1.723431313145179 >10 4.786896811579744 28.813487562684788 >50 0.5984957217642161 10.857939182967721 >100 0.12176122968517349 6.293395775512643 >500 0.011292372107899153 2.15153084421164 >1k 0.0039277816027475316 2.0773117415706595 >5k 0.0014729181010303244 2.596022327680729 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 6551 0.900664327588293 TruSeq Adapter, Index 21 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 6377 0.8767419351290708 RNA PCR Primer, Index 21 (96% over 26bp) CTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGCT 5995 0.8242226597300895 RNA PCR Primer, Index 21 (96% over 27bp) GCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 4863 0.6685896237310134 TruSeq Adapter, Index 21 (96% over 25bp) TCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 2378 0.3269393636093666 RNA PCR Primer, Index 21 (96% over 25bp) TTCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCT 1759 0.2418361398607552 TruSeq Adapter, Index 21 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 1330 0.18285506879750107 TruSeq Adapter, Index 21 (95% over 24bp) TGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 1261 0.17336860282229236 RNA PCR Primer, Index 14 (95% over 24bp) TTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 1204 0.1655319570166852 RNA PCR Primer, Index 14 (95% over 24bp) TGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGCTT 1190 0.16360716681881676 TruSeq Adapter, Index 21 (96% over 27bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCC 1157 0.1590701613524126 No Hit CGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 929 0.12772357812998383 RNA PCR Primer, Index 21 (96% over 25bp) CGTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 917 0.1260737579603823 RNA PCR Primer, Index 14 (95% over 22bp) TTTCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 897 0.12332405767771312 RNA PCR Primer, Index 14 (95% over 22bp) TCTGACTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 847 0.11644980697104017 RNA PCR Primer, Index 21 (96% over 26bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGC 772 0.1061384309110307 No Hit GTTCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 758 0.10421364071316226 RNA PCR Primer, Index 21 (95% over 23bp) TGCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCT 756 0.10393867068489535 RNA PCR Primer, Index 21 (95% over 24bp) GCTGACTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 743 0.10215136550116037 RNA PCR Primer, Index 21 (96% over 26bp) GAATGATACCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCG 742 0.1020138804870269 No Hit TTGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCT 731 0.10050154533155886 RNA PCR Primer, Index 21 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3748501413345945E-4 0.0 0.0 0.8585939132634542 0.0 2 1.3748501413345945E-4 0.0 0.0 3.482495408000528 0.0 3 1.3748501413345945E-4 0.0 0.0 4.888417162529285 0.0 4 1.3748501413345945E-4 0.0 0.0 6.472794465403271 0.0 5 1.3748501413345945E-4 0.0 0.0 9.134779309055313 0.0 6 1.3748501413345945E-4 0.0 0.0 10.766588941805344 0.0 7 1.3748501413345945E-4 0.0 0.0 12.247165059008568 0.0 8 1.3748501413345945E-4 0.0 0.0 14.576298683443504 0.0 9 1.3748501413345945E-4 0.0 0.0 15.619122515645795 0.0 10 1.3748501413345945E-4 0.0 0.0 17.622141686556166 0.0 11 1.3748501413345945E-4 0.0 0.0 21.198264389181578 0.0 12 1.3748501413345945E-4 0.0 0.0 24.398778033194382 0.0 13 1.3748501413345945E-4 0.0 0.0 25.374234208471275 0.0 14 1.3748501413345945E-4 0.0 0.0 25.69746147669904 0.0 15 1.3748501413345945E-4 0.0 0.0 26.189932797325092 0.0 16 1.3748501413345945E-4 0.0 0.0 27.51322605835964 0.0 17 1.3748501413345945E-4 0.0 0.0 29.367073988935207 0.0 18 2.749700282669189E-4 0.0 0.0 31.63846390743409 0.0 19 2.749700282669189E-4 0.0 0.0 32.98554207591373 0.0 20 2.749700282669189E-4 0.0 0.0 34.3019610862416 0.0 21 2.749700282669189E-4 0.0 0.0 36.144122790615825 0.0 22 2.749700282669189E-4 0.0 0.0 37.80824140168722 0.0 23 2.749700282669189E-4 0.0 0.0 39.39578085988627 0.0 24 2.749700282669189E-4 0.0 0.0 40.60413664910525 0.0 25 4.1245504240037834E-4 0.0 0.0 41.6028277917707 0.0 26 4.1245504240037834E-4 0.0 0.0 42.506791759698196 0.0 27 4.1245504240037834E-4 0.0 0.0 43.359198847325644 0.0 28 4.1245504240037834E-4 0.0 0.0 44.276911316666485 0.0 29 4.1245504240037834E-4 0.0 0.0 45.25016773171724 0.0 30 4.1245504240037834E-4 0.0 0.0 46.36572113639613 0.0 31 4.1245504240037834E-4 0.0 0.0 47.3837976660544 0.0 32 4.1245504240037834E-4 0.0 0.0 48.21118248110956 0.0 33 4.1245504240037834E-4 0.0 0.0 49.078162980235156 0.0 34 4.1245504240037834E-4 0.0 0.0 49.91173462092632 0.0 35 4.1245504240037834E-4 0.0 0.0 50.79988781222847 0.0 36 4.1245504240037834E-4 0.0 0.0 51.638271428414306 0.0 37 4.1245504240037834E-4 0.0 0.0 52.40103828682673 0.0 38 4.1245504240037834E-4 0.0 0.0 53.18896490282559 0.0 39 4.1245504240037834E-4 0.0 0.0 54.00150133635434 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATGGG 55 1.8189894E-12 45.000004 3 AGCTACG 55 1.8189894E-12 45.000004 9 AGCACCG 20 7.031577E-4 45.0 20 TCCGGAC 20 7.031577E-4 45.0 19 ACAACGG 35 1.2111013E-7 45.0 26 AACCGGC 20 7.031577E-4 45.0 31 AGGTAAT 20 7.031577E-4 45.0 30 CGGCGGA 20 7.031577E-4 45.0 20 TTGGCCG 20 7.031577E-4 45.0 1 CCCTCCG 20 7.031577E-4 45.0 16 GTACAGT 25 3.8893886E-5 45.0 29 GATCGGC 20 7.031577E-4 45.0 10 CGAGTCG 20 7.031577E-4 45.0 36 GGTCGAT 40 6.8084773E-9 45.0 15 TACCACG 25 3.8893886E-5 45.0 11 GCGGTGC 25 3.8893886E-5 45.0 9 CCCTATG 20 7.031577E-4 45.0 1 TAGACCA 25 3.8893886E-5 45.0 33 ACACCGA 20 7.031577E-4 45.0 43 GGCGTAA 20 7.031577E-4 45.0 8 >>END_MODULE