SRR2935276.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935276.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	625262
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	2783	0.44509341683966086	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	2705	0.43261864626348634	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	2639	0.4220630711605695	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	2278	0.36432727400673637	No Hit
TCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	982	0.15705416289491445	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	724	0.11579146021987582	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	668	0.10683521467800697	No Hit
TTCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT	627	0.10027796347771015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAAGGG	35	1.2107375E-7	45.000004	3
CGTATGG	55	1.8189894E-12	45.0	2
ACTCTCG	20	7.0308155E-4	45.0	1
TTCGTAC	50	2.1827873E-11	45.0	33
TACGGCA	20	7.0308155E-4	45.0	45
ACGGGAT	165	0.0	45.0	5
ATCGTCG	25	3.888758E-5	45.0	10
TGTTACG	25	3.888758E-5	45.0	1
CGTACAT	50	2.1827873E-11	45.0	35
TCGTACA	50	2.1827873E-11	45.0	34
CTCGACA	20	7.0308155E-4	45.0	45
CGACTCC	20	7.0308155E-4	45.0	28
GCGCTAA	20	7.0308155E-4	45.0	19
CGTCAGT	20	7.0308155E-4	45.0	29
CCGCATG	25	3.888758E-5	45.0	1
GTACGTC	20	7.0308155E-4	45.0	10
TATCCGG	50	2.1827873E-11	45.0	2
TTCTACG	60	0.0	44.999996	1
CGTGCAC	30	2.163908E-6	44.999996	33
TACGGGA	305	0.0	44.999996	4