SRR2935275.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935275.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1297000
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGC	6217	0.4793369313801079	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCG	5369	0.4139552814186585	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC	4788	0.36915959907478796	No Hit
CCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	4615	0.35582112567463375	No Hit
GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	4355	0.33577486507324594	No Hit
TCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	3945	0.3041634541249036	No Hit
CTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGCT	3748	0.2889745566692367	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTCATGAT	1774	0.13677717810331533	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1640	0.1264456437933693	No Hit
TCCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG	1517	0.11696222050886662	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	30	2.165718E-6	45.000004	1
GTCGCTA	20	7.0336217E-4	45.000004	37
GTAATCG	20	7.0336217E-4	45.000004	30
CCCGTAT	20	7.0336217E-4	45.000004	22
CCCCGTA	20	7.0336217E-4	45.000004	21
CGCTATA	20	7.0336217E-4	45.000004	10
ACTCGTT	20	7.0336217E-4	45.000004	30
CGTCGTA	20	7.0336217E-4	45.000004	26
AATTACG	20	7.0336217E-4	45.000004	33
CGTAAGT	20	7.0336217E-4	45.000004	44
CTCGACA	20	7.0336217E-4	45.000004	31
CGTCCGA	20	7.0336217E-4	45.000004	35
GCTCGAT	20	7.0336217E-4	45.000004	28
CAATCGA	20	7.0336217E-4	45.000004	26
CGATCGA	60	0.0	45.000004	41
CGTCAGT	30	2.165718E-6	45.000004	19
TATCGAG	20	7.0336217E-4	45.000004	32
GTGCGAC	20	7.0336217E-4	45.000004	11
CGCCAAT	30	2.165718E-6	45.000004	20
GCGAGTA	20	7.0336217E-4	45.000004	39