##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935273.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1357336 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19417299769549 33.0 31.0 34.0 30.0 34.0 2 32.3498065327966 34.0 31.0 34.0 30.0 34.0 3 32.415194911208424 34.0 31.0 34.0 30.0 34.0 4 35.914850854909915 37.0 35.0 37.0 35.0 37.0 5 31.859764273547597 37.0 35.0 37.0 0.0 37.0 6 33.44645393623981 37.0 35.0 37.0 17.0 37.0 7 35.23431118013521 37.0 35.0 37.0 32.0 37.0 8 35.72183453470622 37.0 35.0 37.0 35.0 37.0 9 37.81963935237848 39.0 38.0 39.0 35.0 39.0 10 37.47612455574743 39.0 37.0 39.0 35.0 39.0 11 37.38735582051902 39.0 37.0 39.0 35.0 39.0 12 37.27459892023788 39.0 37.0 39.0 34.0 39.0 13 37.22911423553195 39.0 37.0 39.0 34.0 39.0 14 38.39019152221705 40.0 38.0 41.0 34.0 41.0 15 38.42054509716091 40.0 38.0 41.0 34.0 41.0 16 38.50330058290652 40.0 38.0 41.0 34.0 41.0 17 38.48133181467227 40.0 38.0 41.0 34.0 41.0 18 38.488195995685665 40.0 38.0 41.0 34.0 41.0 19 38.53209816876588 40.0 38.0 41.0 34.0 41.0 20 38.426295331443356 40.0 38.0 41.0 34.0 41.0 21 38.397068227763796 40.0 38.0 41.0 34.0 41.0 22 38.377568266074135 40.0 38.0 41.0 34.0 41.0 23 38.318051683591975 40.0 37.0 41.0 34.0 41.0 24 38.271943719167545 40.0 37.0 41.0 34.0 41.0 25 38.18462414612152 40.0 37.0 41.0 34.0 41.0 26 38.156991341863765 40.0 37.0 41.0 34.0 41.0 27 38.030682896497254 40.0 37.0 41.0 34.0 41.0 28 38.038605768947406 40.0 37.0 41.0 34.0 41.0 29 37.99325369694755 40.0 37.0 41.0 34.0 41.0 30 37.91824500344793 40.0 37.0 41.0 33.0 41.0 31 37.721942098345586 40.0 37.0 41.0 33.0 41.0 32 37.53948690670549 40.0 36.0 41.0 33.0 41.0 33 37.557971644456494 39.0 36.0 41.0 33.0 41.0 34 37.591022414494276 40.0 36.0 41.0 33.0 41.0 35 37.39608910395068 39.0 36.0 41.0 32.0 41.0 36 37.442498393912786 39.0 36.0 41.0 33.0 41.0 37 37.395938072813216 39.0 36.0 41.0 33.0 41.0 38 37.409544873192786 39.0 36.0 41.0 33.0 41.0 39 37.49652996752462 39.0 36.0 41.0 33.0 41.0 40 37.41302521998974 39.0 36.0 41.0 33.0 41.0 41 37.19918723145927 39.0 35.0 41.0 32.0 41.0 42 37.12979763301055 39.0 35.0 41.0 32.0 41.0 43 37.21351750782415 39.0 35.0 41.0 32.0 41.0 44 37.2715517749474 39.0 36.0 41.0 32.0 41.0 45 37.312923992290784 39.0 36.0 41.0 32.0 41.0 46 37.16056304408046 39.0 35.0 41.0 32.0 41.0 47 37.01943660228565 39.0 35.0 41.0 31.0 41.0 48 36.99242044711111 39.0 35.0 41.0 31.0 41.0 49 37.00467238767704 39.0 35.0 41.0 31.0 41.0 50 36.93161162748207 39.0 35.0 41.0 31.0 41.0 51 36.181618994854624 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 2.0 11 6.0 12 4.0 13 5.0 14 27.0 15 21.0 16 33.0 17 52.0 18 94.0 19 197.0 20 434.0 21 793.0 22 1371.0 23 2112.0 24 3093.0 25 4312.0 26 5736.0 27 7126.0 28 9356.0 29 12771.0 30 17358.0 31 23959.0 32 32508.0 33 47098.0 34 73725.0 35 106894.0 36 121848.0 37 196458.0 38 317466.0 39 372160.0 40 310.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.167044858458038 4.229240217602716 56.33527733737262 15.268437586566627 2 17.794341268484736 7.4244696965231896 53.610380922630796 21.17080811236127 3 18.289502378187862 7.170442690682337 53.578332851998326 20.961722079131476 4 18.590017504877203 3.729511336912894 55.82125575391797 21.859215404291938 5 17.013105082308286 15.540662002628677 46.21044457672971 21.23578833833332 6 18.248760807935543 8.067714994666023 54.21428445130756 19.46923974609087 7 77.34989715147907 1.3576594152074357 14.76067826978729 6.5317651635262015 8 79.18953007950869 3.910822375594547 9.179304166396529 7.720343378500239 9 75.15839851002258 3.2850377504169934 12.301154614627476 9.255409124932958 10 34.51481431274202 25.9916483464669 21.022429229019195 18.471108111771883 11 24.41981941096383 27.671114595059738 27.81477835996393 20.094287634012506 12 21.026997000005892 23.131707992715143 33.53841642747264 22.302878579806325 13 20.792493531446894 24.738237252972 35.595313172272746 18.87395604330836 14 17.484322231194042 28.89144618576388 30.957920514890937 22.666311068151142 15 14.05149498723971 27.565982188640103 36.27274307909022 22.10977974502997 16 15.17988176840517 27.790834399146565 31.96504034373213 25.06424348871613 17 16.001343808754793 27.97811300960116 30.012391920644554 26.008151260999483 18 16.635232543747456 25.79619195247161 33.69924617043974 23.86932933334119 19 17.446527609965404 26.558272969994167 31.56830733141978 24.42689208862065 20 20.005510794674276 28.347660417170108 32.29885599438901 19.347972793766612 21 21.18583755238202 29.687785485686668 30.58513146339595 18.541245498535368 22 19.150085166826784 26.96097355407946 28.888572910465793 25.000368368627964 23 18.390067013620797 27.626836685979008 28.22160467268237 25.761491627717824 24 20.262042707185252 25.755745077121656 29.044761208720608 24.93745100697248 25 17.19176386686863 29.517304484667022 26.397958943106204 26.892972705358144 26 19.375011051058838 28.484693546771027 28.076320085815155 24.063975316354977 27 19.595074469401826 29.207653816004292 28.220425893072903 22.976845821520982 28 15.990882139720746 27.503654216789357 29.923836102483097 26.581627541006796 29 19.746621322944353 26.634083233628225 28.998567782774494 24.62072766065293 30 22.919085620656933 29.14178950532514 26.84928418608215 21.08984068793578 31 23.092881939328215 28.807384464863528 23.754766690045795 24.344966905762462 32 21.355213447517784 31.542079485109063 25.026890909841043 22.075816157532106 33 21.49187820849075 29.796896273288265 24.703905296846177 24.007320221374812 34 22.487283914962838 25.571413415690735 27.28366447217196 24.657638197174464 35 20.887827332362804 27.07649395580755 27.20984339912888 24.82583531270076 36 23.616775802012178 29.05905391148544 25.34118302321606 21.98298726328632 37 18.269094756198907 29.766174329716442 29.099279765658615 22.865451148426036 38 18.163078265072173 30.585794526926275 26.641229585010638 24.609897622990918 39 23.097523384040503 28.306034762210686 28.0477346802855 20.548707173463313 40 26.399137722715672 23.1129948664148 29.13810581904554 21.349761591823984 41 21.279034815255766 26.365689851296953 27.905470716167553 24.44980461727973 42 20.163025219989745 26.387791968974522 29.122339641768875 24.32684316926686 43 21.86901400979566 27.199823772448383 27.24130207995662 23.689860137799336 44 20.63534747475938 24.95299616307237 27.007977391007092 27.403678971161156 45 22.61024536297571 23.041605026316255 25.716992697460316 28.631156913247715 46 24.81257404209422 24.922126872049365 28.113598990964654 22.15170009489176 47 18.49740963180819 25.455893013962644 32.31093848538608 23.73575886884309 48 19.063886907884267 25.431801705694095 29.999277997489198 25.50503338893244 49 22.08966681794338 21.94533998950886 32.4780304950285 23.48696269751926 50 23.032911526696413 21.99661690252082 28.33086280773515 26.63960876304762 51 20.081836774387476 21.178985895901974 26.718365975705353 32.0208113540052 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 301.0 1 466.5 2 632.0 3 1299.0 4 1966.0 5 1426.5 6 887.0 7 1130.0 8 1373.0 9 1939.0 10 2505.0 11 3099.5 12 3694.0 13 3965.0 14 4236.0 15 4120.5 16 4005.0 17 3874.5 18 3744.0 19 3976.5 20 4209.0 21 4468.0 22 4727.0 23 5662.5 24 6598.0 25 7427.0 26 9856.0 27 11456.0 28 13987.0 29 16518.0 30 18576.0 31 20634.0 32 24267.5 33 27901.0 34 31304.5 35 34708.0 36 37137.0 37 39566.0 38 45461.5 39 51357.0 40 59654.0 41 67951.0 42 79109.0 43 90267.0 44 105423.0 45 120579.0 46 155523.5 47 190468.0 48 198576.5 49 206685.0 50 191603.5 51 176522.0 52 134954.5 53 93387.0 54 74597.0 55 55807.0 56 46665.0 57 37523.0 58 30836.0 59 24149.0 60 20482.0 61 16815.0 62 13719.0 63 10623.0 64 9171.5 65 7720.0 66 5543.5 67 3367.0 68 2996.0 69 2625.0 70 2027.0 71 1429.0 72 1101.0 73 773.0 74 733.0 75 535.0 76 377.0 77 282.5 78 188.0 79 124.5 80 61.0 81 42.0 82 23.0 83 16.5 84 10.0 85 14.5 86 19.0 87 10.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1357336.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.46278736701251 #Duplication Level Percentage of deduplicated Percentage of total 1 63.839415976091004 16.893688906095576 2 13.64590187263392 7.222171993732583 3 6.491440555293989 5.153448333610393 4 3.7146522909532265 3.932002148715244 5 2.4565809050265184 3.2503989069789947 6 1.6543845780868955 2.626777638790693 7 1.162833370450617 2.1540268557850815 8 0.8970527138157313 1.8990812178165772 9 0.6563017436383713 1.5630816141451596 >10 4.652237772468577 26.595960573471377 >50 0.6739395970793535 11.507161432369768 >100 0.13371823878420686 6.720297762751739 >500 0.013148027621318031 2.346478054783873 >1k 0.006434141176389675 3.035682417658525 >5k 0.0013987263426934076 2.996521396395293 >10k+ 5.59490537077363E-4 2.103220746899221 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC 16568 1.2206262856065115 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT 11843 0.8725179321848091 TruSeq Adapter, Index 21 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGC 9842 0.7250968072754277 No Hit TCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC 9351 0.6889230080098074 TruSeq Adapter, Index 15 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC 8284 0.6103131428032558 TruSeq Adapter, Index 15 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC 7038 0.5185156807157549 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCG 5963 0.4393164257044681 No Hit TCCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG 3604 0.26552010703318857 TruSeq Adapter, Index 21 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAGGTAT 3562 0.2624258105583289 No Hit CGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG 2835 0.20886501205302152 TruSeq Adapter, Index 21 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCC 2226 0.16399771316755762 No Hit TTCCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCT 2209 0.1627452598324954 No Hit CGTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC 2072 0.15265195942640583 No Hit TGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG 1980 0.14587397667195154 TruSeq Adapter, Index 21 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG 1804 0.13290740096777806 No Hit CCTGACTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC 1799 0.1325390323398186 TruSeq Adapter, Index 15 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCT 1766 0.13010779939528608 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTC 1711 0.12605574448773185 No Hit TTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG 1644 0.12111960487307491 TruSeq Adapter, Index 21 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCT 1553 0.11441529584421248 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTA 1435 0.1057217962243689 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9210689173498677 0.0 2 0.0 0.0 0.0 3.640145107769926 0.0 3 7.367372559189471E-5 0.0 0.0 4.892966811460095 0.0 4 7.367372559189471E-5 0.0 0.0 6.306691931842963 0.0 5 7.367372559189471E-5 0.0 0.0 8.998582517519612 0.0 6 7.367372559189471E-5 0.0 0.0 10.384532643354335 0.0 7 7.367372559189471E-5 0.0 0.0 11.761420900941255 0.0 8 7.367372559189471E-5 0.0 0.0 13.901937324288165 0.0 9 7.367372559189471E-5 0.0 0.0 14.673522252412077 0.0 10 7.367372559189471E-5 0.0 0.0 16.916150459429353 0.0 11 7.367372559189471E-5 0.0 0.0 20.370343083805338 0.0 12 7.367372559189471E-5 0.0 0.0 23.75027259278469 0.0 13 7.367372559189471E-5 0.0 0.0 24.62978952890073 0.0 14 7.367372559189471E-5 0.0 0.0 24.919695639104834 0.0 15 7.367372559189471E-5 0.0 0.0 25.424508006860496 0.0 16 7.367372559189471E-5 0.0 0.0 26.524014687593933 0.0 17 7.367372559189471E-5 0.0 0.0 28.10615794467987 0.0 18 0.0013261270606541049 0.0 0.0 29.80094832819582 0.0 19 0.0013261270606541049 0.0 0.0 31.30698662674533 0.0 20 0.0013261270606541049 0.0 0.0 32.52945475549164 0.0 21 0.0013261270606541049 0.0 0.0 34.258356073956634 0.0 22 0.0013261270606541049 0.0 0.0 35.94990481354654 0.0 23 0.0013261270606541049 0.0 0.0 37.52357559218941 0.0 24 0.0013261270606541049 0.0 0.0 38.842556301461094 0.0 25 0.0013261270606541049 0.0 0.0 39.95245097750299 0.0 26 0.0013261270606541049 0.0 0.0 40.93179581179605 0.0 27 0.0013261270606541049 0.0 0.0 41.83555140363182 0.0 28 0.0013261270606541049 0.0 0.0 42.7401174064491 0.0 29 0.0013261270606541049 0.0 0.0 43.66442796772501 0.0 30 0.0013261270606541049 0.0 0.0 44.73866456058043 0.0 31 0.0013261270606541049 0.0 0.0 45.675794350109335 0.0 32 0.0013261270606541049 0.0 0.0 46.57564523448873 0.0 33 0.0013261270606541049 0.0 0.0 47.42878697684287 0.0 34 0.0013261270606541049 0.0 0.0 48.2547431144536 0.0 35 0.0013261270606541049 0.0 0.0 49.15341521922354 0.0 36 0.0013261270606541049 0.0 0.0 49.9645629379903 0.0 37 0.0013261270606541049 0.0 0.0 50.80554851562178 0.0 38 0.0013261270606541049 0.0 0.0 51.626052797538705 0.0 39 0.0013261270606541049 0.0 0.0 52.4096465429341 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGCTA 25 3.8911792E-5 45.000004 12 ACTAGTG 25 3.8911792E-5 45.000004 45 GCGATCG 35 1.2121382E-7 45.000004 9 ACGTAAC 50 2.1827873E-11 45.000004 15 CGTCCAA 25 3.8911792E-5 45.000004 11 GCGAGAC 20 7.0337387E-4 45.0 21 AGCGTCA 20 7.0337387E-4 45.0 11 CTGTACG 45 3.8562575E-10 45.0 1 AGCCCGC 20 7.0337387E-4 45.0 32 CAGTTCG 20 7.0337387E-4 45.0 1 CATTGCG 20 7.0337387E-4 45.0 1 ACCGAGC 20 7.0337387E-4 45.0 12 CGACATA 20 7.0337387E-4 45.0 10 CCATGCG 20 7.0337387E-4 45.0 21 CGTTACC 20 7.0337387E-4 45.0 17 CGCTAAA 20 7.0337387E-4 45.0 19 GTCACGG 20 7.0337387E-4 45.0 2 TTGCGGA 55 1.8189894E-12 45.0 3 AGCGATA 20 7.0337387E-4 45.0 24 ACGTCGG 20 7.0337387E-4 45.0 24 >>END_MODULE