SRR2935271.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935271.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	602953
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	4499	0.746160977721315	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	4296	0.7124933452524492	No Hit
CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	4119	0.6831378233460983	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	3408	0.5652181845019429	No Hit
TCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	1541	0.25557547603212855	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	1157	0.1918889200319096	No Hit
GCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	1037	0.1719868712818412	No Hit
TATGTTGGAAATATAACTTATGCAGGAATAGTTCTGTAAATACATTTAAAT	983	0.16303094934431042	No Hit
TGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCTT	855	0.14180209734423746	Illumina Single End Adapter 1 (95% over 21bp)
TTTGCGGGGCTTTTTGTTAGCTTTTAATTCCTTCTTCTGCTTATCTATGTT	842	0.13964604206298004	No Hit
TGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	813	0.1348363802817135	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	797	0.13218277378170437	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC	710	0.11775378843790478	No Hit
TTCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	707	0.11725623721915307	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCAA	35	1.2106466E-7	45.000004	15
ACGCACT	35	1.2106466E-7	45.000004	16
ACATTCG	35	1.2106466E-7	45.000004	21
CACGCAC	35	1.2106466E-7	45.000004	15
TTATCGA	35	1.2106466E-7	45.000004	27
CATAGGC	35	1.2106466E-7	45.000004	33
TCAGACG	115	0.0	45.000004	22
TATCGAC	35	1.2106466E-7	45.000004	28
AACACGC	35	1.2106466E-7	45.000004	13
CCACAAG	25	3.888591E-5	45.0	32
GTCATTG	20	7.030615E-4	45.0	1
GTCATCG	20	7.030615E-4	45.0	43
AAACTCG	20	7.030615E-4	45.0	13
TGATAGT	25	3.888591E-5	45.0	12
CAAACTA	20	7.030615E-4	45.0	35
TTGGCAC	25	3.888591E-5	45.0	15
AAATCCG	20	7.030615E-4	45.0	5
ACACGGC	20	7.030615E-4	45.0	21
ACTGCCC	25	3.888591E-5	45.0	28
ATTAGTC	25	3.888591E-5	45.0	31